Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00055 ATGGATGCTAAGTCAGCTGTAGATTTAATGGAGTCTTCCTCTGAGGTTCATTTTTCTGGATTTCACATGGATGGTTATGAGAAAGAGAGGCCAACACAGAACAACCAACAACATCAGAAACTGACATGTGTTGCTGGGGGTGCTGCATCTGGCAAGAAAACAGTTTGTGACATGATTATTCAGCAGCTTCATGACCAGCGAGTTGTACTTGTTAACCAGGATTCTTTTTATAATAACTTGACTGAGGAGGAACTTACAAGAGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGGAATTGCTACATGTTATGGACAAGTTGAAGCGTGGCGAAGCTGTAGATATCCCGAAGTATGATTTTAAGAGTTACAAGAGTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGATCCACGTGTTAGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGATACTGTTGAGAAGGGTCGGGATATTGGAACAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTCATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCAAACTTATATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCTCAGACAACAAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGATTGGTTGTAGAACATGGATTGGGACATCTTCCATTTACAGAAAAGCAAGTAATCACTCCCACTGATTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGCATGGAGAATGCTTTAAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAAAGATATCTCAGACAGGCATGTGTTATTGTTGGACCCTATCCTCGGCACAG 1147 0.3993 MDAKSAVDLMESSSEVHFSGFHMDGYEKERPTQNNQQHQKLTCVAGGAASGKKTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTEELLHVMDKLKRGEAVDIPKYDFKSYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTDSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPILGT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00055 382 CDD PRTases_typeI 314 382 IPR000836 -
Sebi479g00055 382 CDD UMPK 44 237 IPR000764 -
Sebi479g00055 382 SUPERFAMILY PRTase-like 240 382 IPR029057 -
Sebi479g00055 382 NCBIfam uridine kinase 38 237 IPR000764 -
Sebi479g00055 382 FunFam Uridine kinase 36 240 - -
Sebi479g00055 382 Pfam Uracil phosphoribosyltransferase 255 382 - -
Sebi479g00055 382 Gene3D - 241 382 IPR029057 -
Sebi479g00055 382 PRINTS Uridine kinase signature 69 80 - -
Sebi479g00055 382 PRINTS Uridine kinase signature 205 218 - -
Sebi479g00055 382 PRINTS Uridine kinase signature 169 179 - -
Sebi479g00055 382 PRINTS Uridine kinase signature 39 56 - -
Sebi479g00055 382 PRINTS Uridine kinase signature 183 194 - -
Sebi479g00055 382 PRINTS Uridine kinase signature 114 129 - -
Sebi479g00055 382 PANTHER URIDINE KINASE 25 367 - -
Sebi479g00055 382 Gene3D - 35 240 IPR027417 -
Sebi479g00055 382 Pfam Phosphoribulokinase / Uridine kinase family 43 225 IPR006083 GO:0005524|GO:0016301
Sebi479g00055 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 230 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00055 Sebi-Chr479 724585 729748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00055 1 382 PRT Gene Family AT4G26510 81.888 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00055 K00876 - gmx:100792258 700.279