Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00050 ATGGCTGAAATTGCAGTGAACCTAGTGATAGGCAAGTTGATTCCATTGCTGAGGTATGAAATGACAGTGCTGAAAGAGGTGCACAATCAAGTGGTGGACATCAAAGATCAATTAGGCCTGATACGAGCATACCTGAGGGATGCAGATGTGAAAGCAGACAGAGAAGAAAGGAGTGATGTGGTGAAAGAGTGGGTGAAGCAAGTGAGGGAAGTAGCGCATCGAATTGAAGATGTGATCGATGAATACCTGCTCCAAGTTGCGGAGCGGAGGCAAAAGCGTGGAATAATTGGTGTGGTAGAGAAGATAGCGCGGTTGTTGAGAAGCATAGAGCCGCGACGTGTGATAACCGCAGAGATTCGTGATATCAACACAGTGATAGCCACACTTGATAAACGGAAAGACGTTTTGGGGTTCAATCCAATTGCGGAGTCAAGCAGTGCTGCAAAGACTTTTACTACGGTGTCAGGGCATGACCTTCGAAGGGCTGCACTGTTCCTTCATGATGCTAAGCTTGTGGGAATCAACGATTCAAAAAGGAAACTCAAAAGCTTGCTCGTGGAGGAAGATTCTAGACGCACCATCATCGCCGTCGTTGGCACAGGAGGACTCGGTAAAACAACAATTACGAGGAAACTATACGAGAAGCAGAAAGAAAAAAGGTTCGATTGTGCTGCTTGGGTCCCTGTATCTAGCACATTTAAGGAGAAGAAAATATTCAAGTTGATGTTGCAAAGCTTTTATGATCGGGAAGATGACGACGATGACTCTAAGGCCATGTTAATTGAGAAAATGAACAAGGACACTATGATAAGAAAAGTGAGAGAGTATTTGCAAGAAAGGAGCTATATGATTGTGTTTGACGATGTTTGGGAAGAAGACTTCTGGGGACGTGTGGAATTTGCATTACCAGAAAATAACAAAGGAAGCAGAATACTCATCACAACAAGACACAAAGGTGTTGCTCAATTTTGCAAGAGTTATGCACATGTTCATATCCATGAGTTGCAACGTTTGCGTTCAAGTGATGCCATGGAACTATTCCATCTCAAGGCATTTCAGTTTCAGCCACAAGGGTGTCCCAAAGAGCTAATGAAATTGTCAGAAGACATTGTGAAGAAGTGTGATGGAGTTCCACTAGCAATTGTGGCCATTGCCAGCCTCCTCTCCACAAAAAACAACAACATTTCTGAATGGCAAAAGGTTCATGATAGTCTTGGCTCAAGACTAGCAAGTGACCCTCATCTTAAAAGCTTCAACCAAGTTTTATCAGAAAGTTACCATGATCTTCCTTCCCACCTCAAGCCATGTCTCTTATACTTTGGCCTTTTCCCTGATGACTACTCCATCAGTTGTGCTAGACTTATTCGTCTATGGATAGCAGAGGGATTGGTGAATGTGAAAGAGAATGAAAATCGTACCCCTGAGGAAGTTGCAGAGGAGTACCTTGATGAATTGATTCAAAGAAGTTTGGTTACAGTGTCTACAGAGTCTCTTAATGGCATGCCAAAAAGTTGCAGGGTGCATGATCTGTTACATGACTTTATTAAAGGAAAGTGTTCAGAGGTGGACTTTTGTCAAGTGATAAAAAATGAAAACTTTAACTTCAATGCAACAACTAGACGCTTGTCAATCCAATTGCAACCTAACAAGGAAGATGCTGCTCTTGAAAGAGTTATTGTTGCAGATCATGGTCGAGTGAGGTTTTGTTTTGCTTTTAACTTTGATGATATGCCAAAGCCTCTATTGAAATCGTTCTTCTCCAGCTTCAAGCTCTTGGTAGGATTGGATTTTGAAGATTCCCCTCTTGATCATCTTCCTGATGCAGTTGGATACTTGTTGCATCTCAAGTACTTGAACTTAAAGAACACCAAAATTAAGACCCTTCCAAAGTTCATTGGCAAGCTTCAGAACCTAGAGACTCTAGATATAAAATACACTCAAGTGCAAGAGTTACCTAGTGAGATTAACAAGCTCACTAAGCTTCGCCATCTTCTGGCATATTCTATCAATGTGGAAATTGAATTCAGCTCAGCATCTTTGCAAGGAGTGATGGTAAAGGAAGGGATTGGGCGTTTAAAGGCCATGCAGAAGCTATCAAGAGTTGATATGAGTAATGGAGATAGCCTAATCAAGGAAGTGAAAAATTTGAAGCAATTGAGGAGACTTGGCATTGTCAAACTAAGAAGACATAATGGAAAACTATTATGCAATGCAATAGAGGGCATGGTGCATCTTCAGTCTTTAAGCATTGCATCAGCAGAGGAGCATGAAATTCTTGACCTGCATTCATTGGTAAATCCTCCTCATCTCCATCTACACCGCCTTTACTTACATGGGCGTATAGAAACTGTGCCACTCTGGATTCCAAAACTCCATGTTTTGGTGAGGCTATTCTTGAATTGGTCAGGACTAATGGAAGATCCATTGCCATTTCTTAAAGACTTGCCAGAGCTGTTGGAGCTTGAGCTTTATAATGCATTTGAAGGTGTTGAGTTGTATATAGGAAAGGGTTGGTTCAAAAAGTTGAAGGAGTTACGACTAGAAAAGATGAAAGCCTTGAAGACCTTAAAAATAGATAGAGGAGCACTGCCTCTTCTTGAAAAGCTGACAATTGGGCCATGCCCTCAAATGGAGGAGGTTCCTCATGATATCCAGAATCTACAAGCTCTCCAACATCTTCGGTTCTATGAAATGCCTATGAACACAACGAAGGAGAAAGGCTATGACATATTGAAGAACATACCATTTGTGATTTATTCCAAGGGAAACAAGTTCTACACTCTTCATAGTGATACAGGGGATGAAACTGATGACTTTTAA 2820 0.4152 MAEIAVNLVIGKLIPLLRYEMTVLKEVHNQVVDIKDQLGLIRAYLRDADVKADREERSDVVKEWVKQVREVAHRIEDVIDEYLLQVAERRQKRGIIGVVEKIARLLRSIEPRRVITAEIRDINTVIATLDKRKDVLGFNPIAESSSAAKTFTTVSGHDLRRAALFLHDAKLVGINDSKRKLKSLLVEEDSRRTIIAVVGTGGLGKTTITRKLYEKQKEKRFDCAAWVPVSSTFKEKKIFKLMLQSFYDREDDDDDSKAMLIEKMNKDTMIRKVREYLQERSYMIVFDDVWEEDFWGRVEFALPENNKGSRILITTRHKGVAQFCKSYAHVHIHELQRLRSSDAMELFHLKAFQFQPQGCPKELMKLSEDIVKKCDGVPLAIVAIASLLSTKNNNISEWQKVHDSLGSRLASDPHLKSFNQVLSESYHDLPSHLKPCLLYFGLFPDDYSISCARLIRLWIAEGLVNVKENENRTPEEVAEEYLDELIQRSLVTVSTESLNGMPKSCRVHDLLHDFIKGKCSEVDFCQVIKNENFNFNATTRRLSIQLQPNKEDAALERVIVADHGRVRFCFAFNFDDMPKPLLKSFFSSFKLLVGLDFEDSPLDHLPDAVGYLLHLKYLNLKNTKIKTLPKFIGKLQNLETLDIKYTQVQELPSEINKLTKLRHLLAYSINVEIEFSSASLQGVMVKEGIGRLKAMQKLSRVDMSNGDSLIKEVKNLKQLRRLGIVKLRRHNGKLLCNAIEGMVHLQSLSIASAEEHEILDLHSLVNPPHLHLHRLYLHGRIETVPLWIPKLHVLVRLFLNWSGLMEDPLPFLKDLPELLELELYNAFEGVELYIGKGWFKKLKELRLEKMKALKTLKIDRGALPLLEKLTIGPCPQMEEVPHDIQNLQALQHLRFYEMPMNTTKEKGYDILKNIPFVIYSKGNKFYTLHSDTGDETDDF 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00050 939 Gene3D - 152 332 IPR027417 -
Sebi479g00050 939 Pfam NB-ARC domain 176 427 IPR002182 GO:0043531
Sebi479g00050 939 PRINTS Disease resistance protein signature 194 209 - -
Sebi479g00050 939 PRINTS Disease resistance protein signature 374 388 - -
Sebi479g00050 939 PRINTS Disease resistance protein signature 633 649 - -
Sebi479g00050 939 PRINTS Disease resistance protein signature 276 290 - -
Sebi479g00050 939 Gene3D - 425 519 IPR036388 -
Sebi479g00050 939 CDD RX-CC_like 2 124 IPR038005 -
Sebi479g00050 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 440 IPR027417 -
Sebi479g00050 939 FunFam Probable disease resistance protein At1g63360 426 516 - -
Sebi479g00050 939 Pfam Rx N-terminal domain 5 92 IPR041118 -
Sebi479g00050 939 PANTHER DISEASE RESISTANCE PROTEIN RP 62 847 IPR044974 GO:0006952
Sebi479g00050 939 Gene3D - 4 116 - -
Sebi479g00050 939 Gene3D Ribonuclease Inhibitor 569 918 IPR032675 -
Sebi479g00050 939 SUPERFAMILY L domain-like 506 909 - -
Sebi479g00050 939 Gene3D - 337 424 IPR042197 -
Sebi479g00050 939 FunFam Probable disease resistance protein At1g61300 156 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00050 Sebi-Chr479 655404 661119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00050 195 381 WRKY Transcription Factor Family AT5G45050 25.000 1.45e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00050 K13457 - csin:114256860 738.799