Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00047 ATGGTAAATTGCATCAACTTGGATATGAGGAAAAGCAAAGACAAAGGTCGGCTTGAAAATAAGACACAGGTCCACTTGCAACAGCAAGAAAAGGGAATGGGAAAAGCTCACCTTCTTATCAAAAGAGTAAAAGCAACTCCCAAATCCTTGCGTGCTGAAACCATTGAAAGAAATTGCAAAATAATCAAACCCGTGTTGAATGGTATTGGAGAAGAAAGAGTCAACCTGGGAAAGCCCGGAGAATTCTTGTTGGAGGGTATCTTGGATTGCATCCATGAAATCACATCAGTATTGGCCTTTGCTAATAGGATGAGCGATTCTGCATACAAGGTTGAAACCACACCTCGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACATACCGCAAATCCGATCCTTTCAAGATCGGAAAGTGGAATTGGTATTTGTCGGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTCCCAGAAACATCCAATCTAACGAGAGAAAATCCCCCAATTGCATCTTTTATCGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGGCCCTCACACATCCAGAAATAAAGGACAAATTGATCAAGAACAATGAGGACTTTGTTTGGGCAATTGAGGTTCCACTGACTGGGAAATTCATTATTGACGTTGAGTTCCTTGATTTGAAGACTACATCTCCAAACGGTGGAGAACCTTGCTCTATCTGGGCTGAAGGATTTACTCAGAAAAGATCAAATGCAAAAGCCATAGAGTCTCTTGGTAGAATGCTAATAGAAGGCATCCACACAGACATCACCATCAATGCTTCTGATGGAAGCATAGGTGCTCATCGAGCTGTTCTTGCTGCCAGGTCACCTGTATTCCGCAGCATGTTCTCACATAATCTTCAGGAGAAAGAGCTTTCAACTATAAACATCTCAGACATGTCAATTGAAGCTTGCCAAGCTTTTCTCAATTATCTTTATGGCATCATAAAAAATGAAGAATTTCTCACACATAGGCTTGCCCTTCTACATGCAGCTGACAAGTATGACATATCTGACTTGAGAGAGGCATGCCATGAGAGTCTTCTAGAAGACATTGATACAAAAAATGTACTTGAGAGGCTCCAAAATGCATCACTATATCAGTTGATGAAGCTTAAGATGAGCTGTATCCGATATCTTGTGAAATTTGGTAAAATATTTGAAATTAAGGATGATTTCAATACCTTCCTGCAAAATGCAGACAGGGATCTCATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 1296 0.4066 MVNCINLDMRKSKDKGRLENKTQVHLQQQEKGMGKAHLLIKRVKATPKSLRAETIERNCKIIKPVLNGIGEERVNLGKPGEFLLEGILDCIHEITSVLAFANRMSDSAYKVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWYLSVEKNRVLFVKLFPETSNLTRENPPIASFIVRVVSSVGDRKALTHPEIKDKLIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTTSPNGGEPCSIWAEGFTQKRSNAKAIESLGRMLIEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSIEACQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIFEIKDDFNTFLQNADRDLIAEVFHEVLDAWKGF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00047 431 SUPERFAMILY POZ domain 252 362 IPR011333 -
Sebi479g00047 431 Gene3D Potassium Channel Kv1.1; Chain A 243 394 IPR011333 -
Sebi479g00047 431 CDD BTB_POZ_ZBTB_KLHL-like 265 347 - -
Sebi479g00047 431 ProSiteProfiles BTB domain profile. 266 325 IPR000210 GO:0005515
Sebi479g00047 431 SMART BTB_4 266 364 IPR000210 GO:0005515
Sebi479g00047 431 PANTHER OS08G0495500 PROTEIN-RELATED 108 430 IPR044714 -
Sebi479g00047 431 Pfam BTB/POZ domain 262 362 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00047 Sebi-Chr479 587623 591198 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sebi479g00047 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00047 K10523 - gmx:100790186 630.943