Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00045 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACGTTGGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAACTCCTGTTTAATGGGAAGGAGATGAGGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTCTCTGGTGCTGCTGCTTCTAGTGGATCTACCAATGATTTGAGCTTAAATGCTGATGGTTCTGCTGTAAACCCTGGTGCTTTCCAGCAGCACATTAGACGTGATTCTAATTTGATGGGTCAGCTCTTTCAGAATGACCCGGAGTTGGCACAAGGTATTCTAGGGAATGATCTCAATAGATTGCAAGAACTTTTACGAATGCGCCATCGCCAGAGAGAAGAATTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGAATTGATGAAAATTGGGCAGCTGCACTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATAATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTTGGCCAATCAGAAATATTGGGTCGAATACATGTAGCTCCTATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGATTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTCTTAGATGAGGAAAAATATTCCAAGGAAGCTTCAAGCTCAGGTGGCCCAAATGCAGTCATTGTTCTTAAATCTTCAAATAGTCCGGTAACAGGGAGCAGTAATCCATCACAAGGTGTGCCATCTGGAGGAGCTTCTGGCAATAAGCCTAAGGACGCTGATTTTGAAGCCAAAGTTGCAAAGCTTGTTGAGCTGGGATTTGGAAGAGAAGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGGTTTCTCTTTGGGGGCTGA 1251 0.4317 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEMRNSEKLSALGVKDDDLLMMVSGAAASSGSTNDLSLNADGSAVNPGAFQQHIRRDSNLMGQLFQNDPELAQGILGNDLNRLQELLRMRHRQREELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYSKEASSSGGPNAVIVLKSSNSPVTGSSNPSQGVPSGGASGNKPKDADFEAKVAKLVELGFGREAVIQALQLFNGNEEQAAGFLFGG 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00045 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 375 416 IPR015940 -
Sebi479g00045 416 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 413 - -
Sebi479g00045 416 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Sebi479g00045 416 CDD UBA_scDdi1_like 379 414 - -
Sebi479g00045 416 FunFam DNA damage inducible 1 homolog 2 175 322 - -
Sebi479g00045 416 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sebi479g00045 416 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sebi479g00045 416 SMART ubq_7 1 72 IPR000626 GO:0005515
Sebi479g00045 416 MobiDBLite consensus disorder prediction 350 367 - -
Sebi479g00045 416 SMART uba_6 378 415 IPR015940 -
Sebi479g00045 416 SUPERFAMILY UBA-like 370 416 IPR009060 GO:0005515
Sebi479g00045 416 Pfam UBA/TS-N domain 379 412 IPR015940 -
Sebi479g00045 416 MobiDBLite consensus disorder prediction 350 374 - -
Sebi479g00045 416 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Sebi479g00045 416 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Sebi479g00045 416 Gene3D - 379 414 - -
Sebi479g00045 416 Gene3D Acid Proteases 176 322 IPR021109 -
Sebi479g00045 416 SUPERFAMILY Ubiquitin-like 1 74 IPR029071 -
Sebi479g00045 416 SUPERFAMILY Acid proteases 183 298 IPR021109 -
Sebi479g00045 416 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Sebi479g00045 416 Coils Coil 127 150 - -
Sebi479g00045 416 Gene3D - 1 83 - -
Sebi479g00045 416 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00045 Sebi-Chr479 567965 574966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00045 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.34e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00045 K11885 - gmx:100779464 677.552