Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00042 ATGGAGACTCGAATTGAAGTGAATCCTACTCTTATTGCATCCGGACTTTTAGATGACTTGTCTAAGCCTTGCAAGATGGAATCTTCAAATGGAATACCAATGCTTAAATCTGAGGATGAAGTTTTTTTTGGCCCTGAAATAAATTTTCACCAGTCAGAATCTACTCTGGTGGATGTTCATGGATCACACTCTGGAGATTTACAGACTGTTCCTCATGAAACATTGGCGGTTATTATTTACAGGAGCATCCGAGTTGTAGTTTTCTCTAACAGACTCAACTTGCTTATACCTTTTGGGCCTCTTGCAATTCTTGTACAGAAATTGACTGGTCATACTGGCTGGGTCTTTGCTTTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCTACAGAGCAACTGGCATTTTTCACTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGATTCGGGTTGTCCAGCTCTCTCTGCTGGGCTCAATTTTGTCAAATATGTTGTTGGTGCTTGGATGTGCATTCTTAAGTGGTGGGATTGTGTTTCATAAGAAGGAACAGCTGATTCAATTTAGCATGCAGGCATCTGCTTCTGTGAATGCAGGATTGTTGTTGATGGCAGTCATGGGCATTCTTTTTCCTGCTGTTCTATATTACACACGCACGGAGGTTCATTTTGGGAAATCAGAGTTGGCACTGTCAAGATTCAGCAGCTGCATCATGCTTGTGGCCTATGCGGCTTACCTATTTTTTCAGTTAAAAAGTGAAAGAAGTCTCTATGTATCCGTGAATGAGGAAGAGGGTCAAAATGGAAACAACTCAAATGAAGATGAATCTCCAGATATTTCTAAATGGGAATCAATAATCTGGCTTTTAGTTATGACTGCTTGGATATCAATCCTGTCAGAATATTTGGTTGGTGCTATACAGGGAGCATCTACTGCATGGAATATTCCAATAGCATTCATCAGTGTCATATTGCTTCCACTAGTGGGGAATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATAGGGTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTGGTTATTGGCTGGATAATGGGGCAACCTATGGACCTAAACTTTCAACTTTTTGAGACTGCAGTACTATTTCTAACTGTTATAGTTGTAGCCTTCATGTTACAGGAAGGAACTGCAAATTACTTCAAGGGACTAATGCTTGTTCTTTGCTATCTGATAGTGGCAGCTAGTTTTTATGTACATGTAGATTCAATTCAGTAG 1371 0.3997 METRIEVNPTLIASGLLDDLSKPCKMESSNGIPMLKSEDEVFFGPEINFHQSESTLVDVHGSHSGDLQTVPHETLAVIIYRSIRVVVFSNRLNLLIPFGPLAILVQKLTGHTGWVFALSLLGIMPLAERLGYATEQLAFFTGDTVGGLLNATFGNATELIISIYALKSGMIRVVQLSLLGSILSNMLLVLGCAFLSGGIVFHKKEQLIQFSMQASASVNAGLLLMAVMGILFPAVLYYTRTEVHFGKSELALSRFSSCIMLVAYAAYLFFQLKSERSLYVSVNEEEGQNGNNSNEDESPDISKWESIIWLLVMTAWISILSEYLVGAIQGASTAWNIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVIGWIMGQPMDLNFQLFETAVLFLTVIVVAFMLQEGTANYFKGLMLVLCYLIVAASFYVHVDSIQ 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00042 456 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 74 453 IPR004713 GO:0006812|GO:0008324|GO:0016020
Sebi479g00042 456 FunFam Vacuolar cation/proton exchanger 143 285 - -
Sebi479g00042 456 NCBIfam calcium/proton exchanger 95 449 IPR004798 GO:0006816|GO:0015369
Sebi479g00042 456 Pfam Sodium/calcium exchanger protein 306 447 IPR004837 GO:0016020|GO:0055085
Sebi479g00042 456 Pfam Sodium/calcium exchanger protein 114 272 IPR004837 GO:0016020|GO:0055085
Sebi479g00042 456 Gene3D - 293 450 IPR044880 -
Sebi479g00042 456 Gene3D - 141 285 IPR044880 -
Sebi479g00042 456 FunFam Vacuolar cation/proton exchanger 294 450 - -
Sebi479g00042 456 NCBIfam calcium/proton exchanger 83 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00042 Sebi-Chr479 490176 495745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00042 38 456 Antiporters AT1G55730 68.974 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00042 K07300 - gmx:100799276 753.821