Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00028 ATGGCTATGGTTTCAGCTGGTTTCCACAAAGTGGCTGACATTTGTGGTAGGAGGGAAAGCTGGAGGCTCCGGCTAAAACTTATCAGGGTCTGGAAGATGTCTGCAGTGGCCACTCCGGACGATCTGTTTGCCATGCACATGCTGTTTGTTGACCAAGAGGGTACCTGCATAGAATCTGTCATTCAGAAGCACTTAATGCACCGGTTTGCCAACTCTGTGATAGAAGGCGAGGTGTATAATGTAACTCAGTTCACCGTGGCTCGAAATAGTGGTAAATTCATAGCAACTCACCATGACCACAAGCTGACCTTTAATGCCAACACAAGGATTGTGGCATGCCCGACGGTTGCTATTCCGGCTACCGGTTTGAACCTCGTCAAAACCTCTGATATTTTGAAGACCAAAGGGTCTTCTCAACATCTTATGGACTTCATGGGTATTGTTACTGGCATATCAGAAGAGCTGACCCTAAGCAAGGAAGGGCGGAAGACACGCCTGATGCTCATCGATATGGTCGACGAAATGGGAAAGATAAGATGTGCTATTTTCGGACAACCCATTGACACTGTCAAAGGCTTCCTTACTCTTTCCCGCTGCGGCCCTGCCTGTTCTAATCATCCATCTTGCTCGTGGGAGGTGGGCATTCAAAACCTTTTGAATGCCTCGAAGCTGTTCTGGAACCCTGAAATACCTGAGGCAATAGAGTTCAAGAATAGCCTCGCTGTCCACGAGATTGAAACCAATGTGGAGATATCCCTCATTTCAGACAATAGGCGCCCTGTCTCTGTTCGCGAGCAATTCCTGACAAAGTTTCCCAGGAAACGTGTGGGGGACCTGAACCACATGCTAGAGGATGGGACTTATATAGTTCTTGGTACAATAACTGAGGTGTTCCAAGAAGATGACTGGTGGTACATAGCATGCTCTTGCATGAGGGCTGTTGACTTCAGCCAGGGTTTTCCCTATTGCAACGATTGCAAACGTGAGGTGTTCGAAATGCCAACTAGGTACAAGGTAAAGATCCTTGTGGTTGATCAGTCAGATTCCACTGAACTAATCATGTTTGACTCGCCATGTTATTCTCTGCTCAACATACCTTGCAAGGGGCTACTTTCGGACCATAAGGCTAGGAAGACAGATGGTTATCCACCTGAAATCTTAGATTTCATTGGCCAAGAAATGCTTTTCAGTGTTGAACTGAATGCAGAGAAATTTTCCTCATTTGATGGAGAGGCCATCAAAGTGCAGAAGATATGTTTAGATGCAAGCATTCTGGATGAGTATAAGGAACTCATTGATGATGAGACTCTTTTAAAGCTGAAATTTGCTCCAGCCTTCTCCAAATTTGAGGATGGCGACGGAAAGAGCTGTGTTATTGATCTGACCCCAAACAACATCACAGTTGGTGGTCAGTGTGACTTGACTCCCATGTGTTCTACGCAGTCTCCCCCCGCTCCGTGTGATAGCATTGTGGATTGCAAACTTCCTGTTAAGGTCAAAGATAATGAGCCCTGTGAAAAAAAAAAGAAGGGGAAAGCCTAA 1542 0.4598 MAMVSAGFHKVADICGRRESWRLRLKLIRVWKMSAVATPDDLFAMHMLFVDQEGTCIESVIQKHLMHRFANSVIEGEVYNVTQFTVARNSGKFIATHHDHKLTFNANTRIVACPTVAIPATGLNLVKTSDILKTKGSSQHLMDFMGIVTGISEELTLSKEGRKTRLMLIDMVDEMGKIRCAIFGQPIDTVKGFLTLSRCGPACSNHPSCSWEVGIQNLLNASKLFWNPEIPEAIEFKNSLAVHEIETNVEISLISDNRRPVSVREQFLTKFPRKRVGDLNHMLEDGTYIVLGTITEVFQEDDWWYIACSCMRAVDFSQGFPYCNDCKREVFEMPTRYKVKILVVDQSDSTELIMFDSPCYSLLNIPCKGLLSDHKARKTDGYPPEILDFIGQEMLFSVELNAEKFSSFDGEAIKVQKICLDASILDEYKELIDDETLLKLKFAPAFSKFEDGDGKSCVIDLTPNNITVGGQCDLTPMCSTQSPPAPCDSIVDCKLPVKVKDNEPCEKKKKGKA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00028 513 Pfam Replication factor-A C terminal domain 291 411 IPR013955 -
Sebi479g00028 513 Gene3D - 7 113 IPR012340 -
Sebi479g00028 513 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Sebi479g00028 513 SUPERFAMILY Nucleic acid-binding proteins 123 243 IPR012340 -
Sebi479g00028 513 SUPERFAMILY Nucleic acid-binding proteins 284 417 IPR012340 -
Sebi479g00028 513 Gene3D - 117 250 IPR012340 -
Sebi479g00028 513 Gene3D - 270 434 IPR012340 -
Sebi479g00028 513 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
Sebi479g00028 513 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00028 Sebi-Chr479 329603 332116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00028 49 419 Core DNA Replication Machinery Family AT5G08020 20.455 2.23e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00028 - - lja:Lj6g3v0884310.1 300.056