LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi479g00021	ATGGTTGTCTGGCCGACAGTTAGACTGCATATGTTGGGATCTGAAGACATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCTCATTCCTTTCAACCTAGTGGTGTTTATGCTGAACCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCTCAAGCAATGTCTGGGGCAAATGCATCCAATTCATCCTCCCTTGAATGCCCTAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCTTTATCCAATAGTGGAATGAATGAGGAAGACGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATCAATCAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCATAATGTATCATCTGCACCTTCCATGCGTGAAGAATGCCTTACTCAAACTCCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGCGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTACGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATTCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTCAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAGTCTAGAAAGGGCTATGCTAACATCTTATCTGCACAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGCACCGGGGGACGTTTTGCAAAGAAAAATGAAGGTGAGGCCTCAAACAACTCGGGCAAAGAAAAGGATAATGGTTCAGGTCCTGTTCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGGATCAAAAGTGGGCAACAAATTTGAGGCACCCAATTATGCAAATGGCAGTGGCTCCTACCATAATAATAATAATGGTTTGCAATCTTCAAGGTATCATCAGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGCCAGCAAAGGGGAAGCATCTCTTCAAATGAGGCATCACAGAGGCGCCTTGCTATTCAGTAG	1134	0.4559	MVVWPTVRLHMLGSEDMQSKSETANRLRSDPHSFQPSGVYAEPWWRGIGYNPMAQAMSGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNQSGNYGQEQQGMQHNVSSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGIPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKGYANILSAQPYLHESRHQHAMRRARGTGGRFAKKNEGEASNNSGKEKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMQQDARGSKVGNKFEAPNYANGSGSYHNNNNGLQSSRYHQHSGERVEEGDCSGQQRGSISSNEASQRRLAIQ	377

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sebi479g00021	377	ProSiteProfiles	NF-YA/HAP2 family profile.	190	259	IPR001289	GO:0003700\|GO:0006355
Sebi479g00021	377	MobiDBLite	consensus disorder prediction	269	312	-	-
Sebi479g00021	377	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	192	256	IPR001289	GO:0003700\|GO:0006355
Sebi479g00021	377	MobiDBLite	consensus disorder prediction	323	344	-	-
Sebi479g00021	377	MobiDBLite	consensus disorder prediction	100	132	-	-
Sebi479g00021	377	Gene3D	-	190	261	-	-
Sebi479g00021	377	MobiDBLite	consensus disorder prediction	234	377	-	-
Sebi479g00021	377	ProSitePatterns	NF-YA/HAP2 subunit signature.	195	215	IPR018362	GO:0003677\|GO:0016602
Sebi479g00021	377	MobiDBLite	consensus disorder prediction	58	132	-	-
Sebi479g00021	377	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	30	313	IPR001289	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi479g00021	Sebi-Chr479	247993	251861	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi479g00021	32	303	CCAAT-HAP2 Transcription Factor Family	AT5G12840	52.727	1.30e-86	261

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Sebi479g00021		CBFB_NFYA	3.4e-25	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi479g00021	K08064		-	gmx:100808378	584.719

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