Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00021 ATGGTTGTCTGGCCGACAGTTAGACTGCATATGTTGGGATCTGAAGACATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCTCATTCCTTTCAACCTAGTGGTGTTTATGCTGAACCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCTCAAGCAATGTCTGGGGCAAATGCATCCAATTCATCCTCCCTTGAATGCCCTAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCTTTATCCAATAGTGGAATGAATGAGGAAGACGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATCAATCAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCATAATGTATCATCTGCACCTTCCATGCGTGAAGAATGCCTTACTCAAACTCCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGCGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTACGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATTCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTCAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAGTCTAGAAAGGGCTATGCTAACATCTTATCTGCACAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGCACCGGGGGACGTTTTGCAAAGAAAAATGAAGGTGAGGCCTCAAACAACTCGGGCAAAGAAAAGGATAATGGTTCAGGTCCTGTTCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACCTTCTGACTCTGCTGAAACCTGGAATTCTCCCAACATGCAACAAGATGCAAGAGGATCAAAAGTGGGCAACAAATTTGAGGCACCCAATTATGCAAATGGCAGTGGCTCCTACCATAATAATAATAATGGTTTGCAATCTTCAAGGTATCATCAGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGCCAGCAAAGGGGAAGCATCTCTTCAAATGAGGCATCACAGAGGCGCCTTGCTATTCAGTAG 1134 0.4559 MVVWPTVRLHMLGSEDMQSKSETANRLRSDPHSFQPSGVYAEPWWRGIGYNPMAQAMSGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNQSGNYGQEQQGMQHNVSSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGIPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKGYANILSAQPYLHESRHQHAMRRARGTGGRFAKKNEGEASNNSGKEKDNGSGPVLSSQSISSSGSEPLPSDSAETWNSPNMQQDARGSKVGNKFEAPNYANGSGSYHNNNNGLQSSRYHQHSGERVEEGDCSGQQRGSISSNEASQRRLAIQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00021 377 ProSiteProfiles NF-YA/HAP2 family profile. 190 259 IPR001289 GO:0003700|GO:0006355
Sebi479g00021 377 MobiDBLite consensus disorder prediction 269 312 - -
Sebi479g00021 377 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 192 256 IPR001289 GO:0003700|GO:0006355
Sebi479g00021 377 MobiDBLite consensus disorder prediction 323 344 - -
Sebi479g00021 377 MobiDBLite consensus disorder prediction 100 132 - -
Sebi479g00021 377 Gene3D - 190 261 - -
Sebi479g00021 377 MobiDBLite consensus disorder prediction 234 377 - -
Sebi479g00021 377 ProSitePatterns NF-YA/HAP2 subunit signature. 195 215 IPR018362 GO:0003677|GO:0016602
Sebi479g00021 377 MobiDBLite consensus disorder prediction 58 132 - -
Sebi479g00021 377 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 313 IPR001289 GO:0003700|GO:0006355
Sebi479g00021 377 SMART cbf3 189 259 IPR001289 GO:0003700|GO:0006355
Sebi479g00021 377 MobiDBLite consensus disorder prediction 58 90 - -
Sebi479g00021 377 MobiDBLite consensus disorder prediction 358 377 - -
Sebi479g00021 377 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00021 Sebi-Chr479 247993 251861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00021 32 303 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.727 1.30e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sebi479g00021 CBFB_NFYA 3.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00021 K08064 - gmx:100808378 584.719