Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi479g00002 ATGGCAGCTGCCTATGCTAAAATGAAGGAATTTGGCATCTCCAAAGCTAAATTAAAGGAAACAGTAGAGGACCTTCTGAAGGTTTATTGTAATAACTGGGAGTTTATTGAGGATGAGAACTATAGAGTTCTAATGGATGCTATTTTAGAGAGGAAAGATGAAGTTAAGGAAGTAGAATCTCAAAAAGAAGCTGAGATTCATGATGATCCTTTAATAAGCGAACCTCTAAAGAAGAGATTGAGGCCAAGGAACCAGAAGGGACAGATTGCAAGTCCGGTAAAAAAATTGAAAACACACTTGGTAAAAACTTCAACAATGCTAGAGAAGGGTGAGGGTGAACTATCTTCTGGCTCTCAAACATCTTCCGAAAAAGACAGTGAACATTTAGTTAAAAGAAAATCTGCAAGAGACAAGAAGCAGATTGTGGTTTATGAGAATAGTATATATCATGGAGATGATGATTTTTGTTCCTGGCCCGCAGAAAATTCATTGATGGGACAAGAAAATGGACTTTTATTTGAAGACTGTGAGCCTCTGAAAAAAAGATCTCGAGCCTACAATAACAAGAAAGATGATAGGGACTTTATATATTATCAAAGGCATAGAAAGAAACCACTCATTTCAGAATTTTCTTTTGGAAAGCAACCATCTGAGTCCTGCACTGACACAGAGAATATTCTAGATTTTTACCATAATGATTGTTTAGGCATTCCCTTTGGTGATGCATATGAAGAGGTGCCTCTCAAATCAATAAATCCAGCTGCTCCCACTGGTACCAGCTCTGATGTCATGGAAGAGGAGACAAAGTTTCTGCAATTTGAACATTTAAATGTGGACACTAAAGGCAGCTGTGATTCAAGTAGATTGCAATTTGATATTGCTTCTTCATCCAAGGGAGATGTGAGAGTTGCTCTAATCTGTAACCCCTCTCAATCTGATTTTCATATCCCAAGTTTGGATGCAGTTCTTAAAGCTGTGGAAGAGAAATATAAATTGCACAAAAGTTTGGATTCAGATTTCTCTATGATGAAGCTGTTGAAAGATGTCTGTGAGTTTTTCTTGGCAATGGCTACCTCATCCTCTGATGATAGGGGTTTGTGGATTAATAATATGTCCCTGTCAAAGGGATGTGATAGTTCAAAAGATTATGGAGACAATTTTTCCGTTCATCTAGGCTATTCAAATTATTTTGCCAATTTTCACAATCTTGTCAAGATAGTACCTCAGATTCCAAAGTCTGTAACTTTAAGTGGACTAGAAGGTCTTCATTGCATTTGTGGCTTCGGGATACCAGATATTTTAGACACTCCAAGTCAAAGGGAAAGAAGGATAAAAGTTCTGGATCACATAGAGTTCACAAATTCAAATGTTGTGGCTGGCATTGAAAAGGACTGCTCTTCCGCTGTGGAGTGTTGTTATATTGATGACATAACTAGAGGAGAAGAAAAGGTGAAAATTTCCTTGGAAAATAGCTTCTTTGGTGATCAACCGCCAATCTTCTTCTACACTCAACATAATTTAATATATGATAAGGCAAATGTCAAGTTTTCACTTGCATGCATATCCAGTGAAGAGTGCTGTTCACATTGTTCTGGAGATTGCCTTGCAGTGCCATTACCTTGTGCATGTGCTCGTATATCTGGTGGCGAGTATGCTTACACACAAGAAGGATTGCTTAAGGAAAAGTTTCTTGAGGAGTGTATATCCCTTGTTAGGGATCCAAAGGAACACAATTTCTTTTATTGCAAGAGATGCCCACTAGAGATGTCTAAGAACAAACAGGAAGTCAAGCACTGCAAGGGACATCTGCTGCGAAAATTCATAAAAGAATGCTGGTCAAAATGTGGATGTAATAAAAACTGTGGCAACCGTATTGTTCAGCAAGGCATCACTACAGATCTTCAGGTGTTTTGGACACCAGAGGGGAAGGGTTGGGGAATCCGAACACTTAAAGATTTGCCAAAGGGTGCCTTTGTTTGTGAGTTTGCTGGGGAATTAGTAACCAACTTAGAACTATGTAAGCGAATTGTGCAAAGCATTGGTGAAGAGAAGCACACATATACAGTACTGCTTGATGCAGATTGGTGTTCAGAGAATAACCTGAAGGATGAAGAGACTCTCTGTTTAGATGCAACATTATATGGAAATGTGTCTCGATTTATCAATCACAGGACTATGGCATTGACTTCAATTACCAAGATCATCCTGTGA 2211 0.3853 MAAAYAKMKEFGISKAKLKETVEDLLKVYCNNWEFIEDENYRVLMDAILERKDEVKEVESQKEAEIHDDPLISEPLKKRLRPRNQKGQIASPVKKLKTHLVKTSTMLEKGEGELSSGSQTSSEKDSEHLVKRKSARDKKQIVVYENSIYHGDDDFCSWPAENSLMGQENGLLFEDCEPLKKRSRAYNNKKDDRDFIYYQRHRKKPLISEFSFGKQPSESCTDTENILDFYHNDCLGIPFGDAYEEVPLKSINPAAPTGTSSDVMEEETKFLQFEHLNVDTKGSCDSSRLQFDIASSSKGDVRVALICNPSQSDFHIPSLDAVLKAVEEKYKLHKSLDSDFSMMKLLKDVCEFFLAMATSSSDDRGLWINNMSLSKGCDSSKDYGDNFSVHLGYSNYFANFHNLVKIVPQIPKSVTLSGLEGLHCICGFGIPDILDTPSQRERRIKVLDHIEFTNSNVVAGIEKDCSSAVECCYIDDITRGEEKVKISLENSFFGDQPPIFFYTQHNLIYDKANVKFSLACISSEECCSHCSGDCLAVPLPCACARISGGEYAYTQEGLLKEKFLEECISLVRDPKEHNFFYCKRCPLEMSKNKQEVKHCKGHLLRKFIKECWSKCGCNKNCGNRIVQQGITTDLQVFWTPEGKGWGIRTLKDLPKGAFVCEFAGELVTNLELCKRIVQSIGEEKHTYTVLLDADWCSENNLKDEETLCLDATLYGNVSRFINHRTMALTSITKIIL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi479g00002 736 SUPERFAMILY SET domain 473 724 IPR046341 -
Sebi479g00002 736 Gene3D SET domain 456 735 IPR046341 -
Sebi479g00002 736 MobiDBLite consensus disorder prediction 109 123 - -
Sebi479g00002 736 Pfam Ubiquitin-binding WIYLD domain 2 54 IPR018848 -
Sebi479g00002 736 Pfam Pre-SET motif 477 624 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi479g00002 736 Gene3D - 1 54 IPR043017 -
Sebi479g00002 736 SMART preset_2 474 616 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi479g00002 736 Pfam SET domain 644 724 IPR001214 GO:0005515
Sebi479g00002 736 MobiDBLite consensus disorder prediction 107 133 - -
Sebi479g00002 736 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 3 725 - -
Sebi479g00002 736 ProSiteProfiles Pre-SET domain profile. 530 629 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi479g00002 736 ProSiteProfiles SET domain profile. 632 736 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi479g00002 Sebi-Chr479 41545 46390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi479g00002 608 723 C2H2 Transcription Factor Family AT2G23740 42.735 1.89e-19 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi479g00002 Pre-SET 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi479g00002 - - qsu:111999549 530.406