Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi478g00045 ATGTCTCCACATCTTCATATAATTAAGCTTTCACCAAATGCCAATTTCACAACACAAACCAACAACATGAAGATATTTTACGCTAAAGAGCTTCTGTGTCCATTTCTTCTGCTGTTGTTCCTTTCCCCTTCATTCCAATCACTTGACAGCATCACCCAAAACCATCCCCTGAAAGACGGCGACGTTTTGGTCTCCAAAGACAGGGGAACCTTTGCACTTGGTTTCTTCAGTCCGCGAGATTCTAGAAGACGATACGTTGGGATATGGTACAACAAAATTGCAGAGCAAACGGTTGTGTGGGTTGCAAACAGAGACACCCCTCTCAATGACACTTCCGGTGTTCTCTCCATCAACAAAGGAAACCTCGTACTCCACCGTGACAATAACCGAAATCTTAGTCCAATTTGGTTTTCAAATGTTTCTACCTTAACTGCCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACTTGGTTTTGATCCAAAGTGGAAGGAACAGCAACGTTTTGTGGCAGAGTTTTGATTATCTCGGTAACACTTTGCTTCCTTTCATGAAGCTCGGGTTGGACCGGAAAACCGGTTTGGACCGGTTTCTTACGTCCTGGAAGTCCCCGATCGACCCAGGATCCGGGAACTTGACTTACCGGATCGACCCGACTGGGTTCCCGCAGCTGTTCCTGTACAAGAATCAAGCTCCCCTGTGGCGGGTCGGGTCATGGACGGGGCGGAGATGGAGCGGGGTACCTGAAATGACTCCGAATTTCATCTTCAATATTAGCTTTATCGACAATGCAGATGAAGTTTCCATAATGTATGGAGTGACGGACCCCATGGTGTTGTCGAGAATGGTGTTAGAAGAAACGGGTCACGTGAGAAGGTTAACGTGGCAACCTCATGAGGAGAGGTGGTTCCAAATCTGGTTTGCTCCGAAAGAGGAGTGCGACAACTTCAGACAATGCGGATTGAACGCGAACTGCGACCCGTATAAAGAAGACAAGTTTGAGTGCGAGTGTTTACCTGGGTTCGAACCCAAGTCTGAGAGAGAATGGTTTCTTAGAGATGGGTCGGGTGGGTGCGTTAGGAAGCGAAGCGTATCCACGTGTGGAAGTGGGGAGGGGTTTGTGAAGGTGGCACGTGTGAAGGTACCAGACACTTCGGAGGCACGTGTTGATGAGAGGCTAGACATGAGAGGGTGTAAGGAGAAATGTTTGAGGGATTGTTCTTGTGCAGCTTATACAAGTGCCAATGAGAGCTCTCAGAGTGGGTGTGTTACTTGGCATGGAGACATGGAAGATACAAGAACATACGCACAGGTGGGACAAGATTTGTATGTACGCGTCGATGCACTTGAATTAGCTAAATATGTGAAAAAACCATATGGTTCTCTTGGCAAGAAGGGGATGGTGGCCATTTTAGTCGTTGGTATATGCTTGTTATTGTTTTTTGGGATCACTTGTTTGTATTGGTTTGTAAAAGTCAGGAAACAAGTGACAAGGGATCGCAAGTTTTCGTTTCGTCTTGACTTTGAGGACTCCCCAAATCATCAAGAATTTGAAAGTACGAAAAATTCAGATTTACCATTCTTTGATCTTAGCTCCATAGCTGCCGCAACAGACAATTTCTCTACAGATAACAAGCTTGGTCAAGGTGGTTTTGGTTCTGTTTATAAGGGTGTCCTGAGTAATGGAATGGAAATAGCAGTGAAGAGATTGTCAAAGTATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGATTGTTTTGATTTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGTTGCATTCAGGGAGAGGAGAAGATGTTAATCTATGAGTATTTGCCAAACAAAAGCTTAGACTCTTTCATTTTTGATGAGTCTAAAAGGTCAGAGTTAGACTGGGAAAAAAGATTTGATATCATCTGTGGGGTTGCTAGAGGGATCTTATACCTTCATCAAGATTCACGATTAAGAATCATTCATAGAGACTTAAAGGCCAGCAATGTCTTGCTAGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGCATGGCTAGGATATTTGGTGGAGATCAAATTGAAGCAGACACAAATCGAGTTGTTGGAACCTATGGCTACATGTCACCAGAATATGCCATGAAAGGACATTTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTTTAGAGATTGTTACTGGTAGAAAGAATAGCATTGAATATGAGGACATTACATCCACAAGTTTAGTTGGACATGTATGGGATCTATGGAGAGAAGATAAAGCTATGGAGATTATTGATCAAACATTAAGGGAGTCATGCTCTGACTACGAAGTCCAAAGATGCATCCAAATTGGGCTTTTATGTGTACAAGATTATGCTGTAGACAGACCTTCTATGTCAACAGTTGTTTCCATGTTGGGTAATGACTCAACTCTTCCTATTCCAAAACAACCAGCATTTATTTTCAAGAGAACTAATTGTGATAGTTCAACCAGTGAAGGAATTTATTCAGTGAATGAGGTAAGTATGACTATGATTGAAGCACGCTAG 2565 0.4281 MSPHLHIIKLSPNANFTTQTNNMKIFYAKELLCPFLLLLFLSPSFQSLDSITQNHPLKDGDVLVSKDRGTFALGFFSPRDSRRRYVGIWYNKIAEQTVVWVANRDTPLNDTSGVLSINKGNLVLHRDNNRNLSPIWFSNVSTLTANASAKLLDTGNLVLIQSGRNSNVLWQSFDYLGNTLLPFMKLGLDRKTGLDRFLTSWKSPIDPGSGNLTYRIDPTGFPQLFLYKNQAPLWRVGSWTGRRWSGVPEMTPNFIFNISFIDNADEVSIMYGVTDPMVLSRMVLEETGHVRRLTWQPHEERWFQIWFAPKEECDNFRQCGLNANCDPYKEDKFECECLPGFEPKSEREWFLRDGSGGCVRKRSVSTCGSGEGFVKVARVKVPDTSEARVDERLDMRGCKEKCLRDCSCAAYTSANESSQSGCVTWHGDMEDTRTYAQVGQDLYVRVDALELAKYVKKPYGSLGKKGMVAILVVGICLLLFFGITCLYWFVKVRKQVTRDRKFSFRLDFEDSPNHQEFESTKNSDLPFFDLSSIAAATDNFSTDNKLGQGGFGSVYKGVLSNGMEIAVKRLSKYSGQGIEEFKNEIVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDSFIFDESKRSELDWEKRFDIICGVARGILYLHQDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEADTNRVVGTYGYMSPEYAMKGHFSIKSDVYSFGVLLLEIVTGRKNSIEYEDITSTSLVGHVWDLWREDKAMEIIDQTLRESCSDYEVQRCIQIGLLCVQDYAVDRPSMSTVVSMLGNDSTLPIPKQPAFIFKRTNCDSSTSEGIYSVNEVSMTMIEAR 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi478g00045 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 506 615 - -
Sebi478g00045 854 ProSiteProfiles Protein kinase domain profile. 540 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi478g00045 854 CDD PAN_AP_plant 365 446 - -
Sebi478g00045 854 Pfam PAN-like domain 367 431 IPR003609 -
Sebi478g00045 854 Gene3D Phosphorylase Kinase; domain 1 504 615 - -
Sebi478g00045 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 173 - -
Sebi478g00045 854 SUPERFAMILY Protein kinase-like (PK-like) 524 828 IPR011009 -
Sebi478g00045 854 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 616 818 - -
Sebi478g00045 854 CDD STKc_IRAK 546 811 - -
Sebi478g00045 854 SMART serkin_6 540 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi478g00045 854 Pfam Domain of unknown function (DUF3403) 813 854 IPR021820 GO:0004674
Sebi478g00045 854 ProSiteProfiles Bulb-type lectin domain profile. 48 172 IPR001480 -
Sebi478g00045 854 Pfam Protein tyrosine and serine/threonine kinase 542 811 IPR001245 GO:0004672|GO:0006468
Sebi478g00045 854 CDD B_lectin 54 175 IPR001480 -
Sebi478g00045 854 SMART blect_4 54 176 IPR001480 -
Sebi478g00045 854 Pfam D-mannose binding lectin 97 202 IPR001480 -
Sebi478g00045 854 Gene3D - 45 173 IPR036426 -
Sebi478g00045 854 SMART ntp_6 368 446 IPR003609 -
Sebi478g00045 854 Gene3D Transferase(Phosphotransferase) domain 1 616 817 - -
Sebi478g00045 854 ProSitePatterns Protein kinases ATP-binding region signature. 546 568 IPR017441 GO:0005524
Sebi478g00045 854 ProSiteProfiles PAN/Apple domain profile. 367 447 IPR003609 -
Sebi478g00045 854 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 36 803 - -
Sebi478g00045 854 PIRSF SRK 21 854 IPR024171 GO:0004674
Sebi478g00045 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Sebi478g00045 854 SUPERFAMILY alpha-D-mannose-specific plant lectins 98 207 IPR036426 -
Sebi478g00045 854 CDD EGF_CA 312 345 - -
Sebi478g00045 854 Pfam S-locus glycoprotein domain 234 345 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi478g00045 Sebi-Chr478 767476 772161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi478g00045 528 854 Receptor kinase-like Gene Family AT4G11480 57.647 3.39e-130 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi478g00045 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi478g00045 - - gmx:100812814 1355.5