Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi478g00033 ATGGGGTTTGACAGAAGAACTAACCAGAGTTGGTTCCTCCAATCCTGGAAGACAGATGATGACCCAGGAATAGGTTCCTTCACATTGAAATTCAGTTCAAGTGGGAAACCTCAGATGTTTATGTACAACCAGAACCTTCCTTGGTGGAGAGGTGGACATTGGAATGGGGAATTATTTGTGGGTGTACCTAATATGAAACGTGATATGGCCACTTTTAATGTTTCTTTTGTGGAAGATGATGACTATGTAGCAGTCTCATATAACATGTTTGATAAGTCCATTATTCCCAGGATAGTAGTTCAGCAATCAGGTTTCTTTCAAATATTCACTTGGGATAACCAAAAAGGTCAATGGAACCGTTACTGGTCAGAACCAACAAATCAATGTGATAACTATGGAAGCTGTGGATCAAACAGTAACTGTGACCCTTTGAACTTTGAGGACTTTAAGTGTACTTGTTTACCAGGTTTTGAACCAAAATTCCTACATGATTGGTATGAGAACAGAGATGGGTCAGGAGGGTGTGTGAGGAAAAAAGGTGCATCTGTTTGTGGGAATGGAGAAGGGTTTGTCAGAGTTGAAGGCTTGAAGGTACCTGATATATCTGTGGCAATTGTTAAAAGTGGTTTGAGTTTGGAAGAATGTGAGAAGGAATGCTTGAGAAACTGCTCTTGTACTGCTTATGCAGTTGCTGATGTGAGGAATGGTGGAAGTGGGTGCTTGGCATGGCATGGCAATTTAATGGACACACAAAAACTAAGTGATCAAGGCCAAGATGTATTTGTACGTGTTGATGCAGTTGAACTAGCCAATTACTACAAAAAAAGTAAAGGAGTACTTGCTAAAAAGAGGATGGTTGCAGTTCTGGTAGCTTCTTTACTTGCAATTGTCATTCTCCTCTCCTATAAAATGATGCAGCAGTTAAACAAAGATTCTCCTAGAGAAGAGAATGATGTTCAAAGTAACACACATCCAAATCTTCCCTTTTTCACCTTTAAAACTATAATGGCAGCCACAAGAAATTTTAGTCATGAGAATAAGCTTGGTCAAGGTGGATTTGGCTCTGTCTATAAGGGCTGCCTAGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCCAAAGATTCAGATAGAAATCAAAGACCATCCTTGGATTGGAGCAAGCGTTTTGAAATTATTTTTGGTATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTGAAAATAATTCACAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAGAGTGGTTGGAACATAGTAGTGGATATATGTCACCAGAGTATGCAATGGAAGGGAGATATTCAACAAAATCTGATGTCTTCAGTTATGGGGTCTTACTACTGGAGATAATTGCTGGCAAGAGGAACACAGATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGATGCTTTGGACAGAAGGAAGGGCCTTAGATATTGTTGATTCAACATTAGGCCAGTCCTATCCTCCTGCTCTAGTTCTGAGATGCATTCAAATTGGACTCTTATGTGTGCAAGAAAATGCTATCAATAGACCATCCATGTTAGAAGTTGTTTTCATGCTAGGCAATGAAGCACCTCTTTCCTCACCCGAAAAGCCTGCATTTTTATTTAATGTCAACCAAGATTTGCAAGAGTCATCAACTTCAGGAGGAGCATGTTCAATAAATGAAGTAACAACAACTACCATCAGTGCTCGCTAA 1824 0.3947 MGFDRRTNQSWFLQSWKTDDDPGIGSFTLKFSSSGKPQMFMYNQNLPWWRGGHWNGELFVGVPNMKRDMATFNVSFVEDDDYVAVSYNMFDKSIIPRIVVQQSGFFQIFTWDNQKGQWNRYWSEPTNQCDNYGSCGSNSNCDPLNFEDFKCTCLPGFEPKFLHDWYENRDGSGGCVRKKGASVCGNGEGFVRVEGLKVPDISVAIVKSGLSLEECEKECLRNCSCTAYAVADVRNGGSGCLAWHGNLMDTQKLSDQGQDVFVRVDAVELANYYKKSKGVLAKKRMVAVLVASLLAIVILLSYKMMQQLNKDSPREENDVQSNTHPNLPFFTFKTIMAATRNFSHENKLGQGGFGSVYKGCLVNGQEIAVKRLSKDSDRNQRPSLDWSKRFEIIFGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQARTKEWLEHSSGYMSPEYAMEGRYSTKSDVFSYGVLLLEIIAGKRNTDCETGRASPNLIGHVWMLWTEGRALDIVDSTLGQSYPPALVLRCIQIGLLCVQENAINRPSMLEVVFMLGNEAPLSSPEKPAFLFNVNQDLQESSTSGGACSINEVTTTTISAR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi478g00033 607 ProSiteProfiles PAN/Apple domain profile. 184 265 IPR003609 -
Sebi478g00033 607 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 554 - -
Sebi478g00033 607 CDD PAN_AP_plant 185 264 - -
Sebi478g00033 607 ProSiteProfiles EGF-like domain profile. 125 163 IPR000742 -
Sebi478g00033 607 SUPERFAMILY Protein kinase-like (PK-like) 323 583 IPR011009 -
Sebi478g00033 607 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Sebi478g00033 607 SMART ntp_6 185 264 IPR003609 -
Sebi478g00033 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Sebi478g00033 607 Gene3D Hepatocyte Growth Factor 182 263 - -
Sebi478g00033 607 Pfam Protein tyrosine and serine/threonine kinase 379 559 IPR001245 GO:0004672|GO:0006468
Sebi478g00033 607 ProSiteProfiles Protein kinase domain profile. 250 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi478g00033 607 Gene3D Transferase(Phosphotransferase) domain 1 323 375 - -
Sebi478g00033 607 SMART serkin_6 342 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi478g00033 607 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 371 570 - -
Sebi478g00033 607 Gene3D Transferase(Phosphotransferase) domain 1 376 571 - -
Sebi478g00033 607 Pfam PAN-like domain 184 250 IPR003609 -
Sebi478g00033 607 Pfam S-locus glycoprotein domain 49 161 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi478g00033 Sebi-Chr478 636626 640450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi478g00033 294 607 Receptor kinase-like Gene Family AT4G23280 46.584 3.82e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi478g00033 PK_Tyr_Ser-Thr 8.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi478g00033 - - mtr:11429525 992.645