Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi478g00032 ATGATCCTATTGGAATTTGACATAAAGAAAATAGTAGAGTTTAACGGGGAACAAGAAAAGGTTAATAAAGATGACATAGGATTTGGAGGTGATTCTCACAAGACAAATACAGCTAAGACTGTAGGCATTATCATTGGTGGTGCAGCTTTGATACTTTTGGCATTAGGTCTCTTTTTCTTATGGAAGAAGAGGAAGTTGCAATGTATATTGAAAAGGAAGACTGAACACAGAGGTTCTTTAGAAAGAAGTCAAGATTTGCTAATGAGTGAGGTGGTGTTCTCAAGTAAAAGAGAACAGTCAGGTGAAAGGAACATGGATGACCTAGAGTTGCCATTGTTTGATTTTAATACCATAACAATGGCTACAAACAACTTCTCTGAAGCAAATAAACTTGGACAAGGGGGCTTTGGTAGTGTTTACAAAGGCAGGTTGATAGAAGGTCAGGAAATTGCTGTGAAGAGATTGTCAAAAACTTCTGGGCAAGGTGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTAGTGTATGAGTACATGGAAAACAGAAGCCTTGATGCTATTTTGTTTGACAAAGTAAAAAGATCCTCACTGAACTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTATCTACACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGCAACATTTTACTTGACAAAGAGATGAACCCAAAAATATCAGATTTTGGGATGGCTAGAATTTTTGGTGCGGATCAGACAGAAGCAAATACAATGAGAGTTGTTGGAACATATGGTTATATGGCCCCTGAATATGCTATGGATGGGAATTTCTCAGTGAAATCTGATGTTTTTAGTTTCGGGGTTCTTGTGCTGGAGATCATAAGTGGGAAAAAGAACAGAGGATTCTATTTTGCAAACAAAGAATTGAATCTTCTAGGACATGGGTGGAAGCTGTGGAGAGAAGGAAATGCATTGGAACTGATTGATTCATCCATTGACAAGTCATATTCACCATCTGAAGTTCTTAGATGCATACAAGTTGGGCTCTTATGTGTACAAGAGCGAGCAGAAGATAGGCCAACAATGTCTTCAGTGGTTTTGATGCTGAGTAGTGAAACTGCAACAATGCCTCAGCCAAAAAACCCAGGGTTTTGCCTAGGAAGGAATCAAATGGAAACTGATTCATCTTCAAGTAAACAAGATGAATCATTCACTGTGAACCAAGTCACTGTCACAATGCTAGATGCCAGATAA 1335 0.3888 MILLEFDIKKIVEFNGEQEKVNKDDIGFGGDSHKTNTAKTVGIIIGGAALILLALGLFFLWKKRKLQCILKRKTEHRGSLERSQDLLMSEVVFSSKREQSGERNMDDLELPLFDFNTITMATNNFSEANKLGQGGFGSVYKGRLIEGQEIAVKRLSKTSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKVKRSSLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGADQTEANTMRVVGTYGYMAPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYFANKELNLLGHGWKLWREGNALELIDSSIDKSYSPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATMPQPKNPGFCLGRNQMETDSSSSKQDESFTVNQVTVTMLDAR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi478g00032 444 CDD STKc_IRAK 131 396 - -
Sebi478g00032 444 Pfam Receptor serine/threonine kinase 81 115 IPR022126 GO:0004674
Sebi478g00032 444 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 201 404 - -
Sebi478g00032 444 Gene3D Transferase(Phosphotransferase) domain 1 201 408 - -
Sebi478g00032 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Sebi478g00032 444 SMART serkin_6 125 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi478g00032 444 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 444 - -
Sebi478g00032 444 Pfam Domain of unknown function (DUF3403) 398 444 IPR021820 GO:0004674
Sebi478g00032 444 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Sebi478g00032 444 SUPERFAMILY Protein kinase-like (PK-like) 110 425 IPR011009 -
Sebi478g00032 444 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 90 200 - -
Sebi478g00032 444 Pfam Protein tyrosine and serine/threonine kinase 128 394 IPR001245 GO:0004672|GO:0006468
Sebi478g00032 444 Gene3D Phosphorylase Kinase; domain 1 99 200 - -
Sebi478g00032 444 ProSiteProfiles Protein kinase domain profile. 125 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi478g00032 Sebi-Chr478 628231 630750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi478g00032 113 444 Receptor kinase-like Gene Family AT4G11530 58.754 5.65e-144 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi478g00032 PK_Tyr_Ser-Thr 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi478g00032 - - gmx:106799702 713.375