Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi478g00014 ATGGGAAGATCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACACCAGAGGAAGACCAGAAACTCATTGATTACATTCAGAAACATGGGTATGGCAATTGGAGATTACTCCCCAAAAATGCTGGATTGCAAAGGTGTGGAAAAAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGACATAAAGCGAGGTCGATTCTCTTTTGAAGAGGAAGAGACAATTATACAGCTACATAGCATTCTTGGCAACAAGTGGTCTACTATTGCATCTCGATTGCCAGGAAGGACAGACAATGAAATCAAGAATTACTGGAACACACACATTAGAAAAAGGCTCTTAAGGATGGGAATTGATCCTGTCACACATAGTCCACGCCTTGATCTATTGGACCTTTCTTCCATCCTAAGTTCATCTCTCTATGGCTGTTCATCTTCACAAATCAACATTCAAAGGCTTATTGGTACTCAGCCTCTGGTGAACCCTGAGATTCTAAAGTTGGCTTCATCACTCTGCAGTAATTCCCAAATTCAGAACCAACAAATCCCTCAATTTGTTCAGAGTCAGGACTCTGCTCATCATCAACAACAAGTACTGTCTGAAGCAGGTTGTAACACATTGAATATTAATCCCTCATTGCCTTTCACTCAACCACTACTTGAATCTGAGTCCAATGTGAACACATACCCATCAAATTTCCCTGATTTTAGCTTCCAACAACAGAGTGATTGGTATTGCAATAATGGGATTGGGATTGCTTCAAGCACTATAACAGAGGATTATGTCCCTCAATTACCAAGCTATGGTTACTATAGTTCTGATTATCATGCAAATAATAATGATCTTATGGACCCTCCAATGTCAGAAAACCAGAACATGGGTTTTGCTTCAGTTCTATCAACACCTTCTTCGTCAAGTCCCACACCGCTGAACTCAAACTCGACGTATATCAATGGAAGCAGTACGGAGGATGAGACGGAAAGCTATGTGAGCAGCAACTTATTGAGATTTCAAATCCAAGAAATCTTAGGTGTGATGTGA 1050 0.4124 MGRSPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILSSSLYGCSSSQINIQRLIGTQPLVNPEILKLASSLCSNSQIQNQQIPQFVQSQDSAHHQQQVLSEAGCNTLNINPSLPFTQPLLESESNVNTYPSNFPDFSFQQQSDWYCNNGIGIASSTITEDYVPQLPSYGYYSSDYHANNNDLMDPPMSENQNMGFASVLSTPSSSSPTPLNSNSTYINGSSTEDETESYVSSNLLRFQIQEILGVM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi478g00014 349 CDD SANT 69 112 IPR001005 -
Sebi478g00014 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Sebi478g00014 349 CDD SANT 16 61 IPR001005 -
Sebi478g00014 349 FunFam MYB-related transcription factor 13 66 - -
Sebi478g00014 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi478g00014 349 SMART sant 66 114 IPR001005 -
Sebi478g00014 349 SMART sant 13 63 IPR001005 -
Sebi478g00014 349 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi478g00014 349 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi478g00014 349 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi478g00014 349 Gene3D - 13 66 - -
Sebi478g00014 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi478g00014 349 MobiDBLite consensus disorder prediction 296 327 - -
Sebi478g00014 349 FunFam Transcription factor MYB39 69 130 - -
Sebi478g00014 349 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi478g00014 349 Gene3D - 69 116 - -
Sebi478g00014 349 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi478g00014 Sebi-Chr478 337304 338573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi478g00014 1 348 MYB Transcription Factor Family AT4G21440 57.895 9.30e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi478g00014 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi478g00014 K09422 - gmx:778071 414.075