Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi478g00009 ATGGGTGATGAAGTCTTCGCCGGAGAATCCAAAACGACGGTGGCACAACCCACCGGAGCTTCCCTCCTCCGGCGAGCACTGGAGCTTATCTGCTCCTTGCTCTCTCTCTCACACTCGATCAGAGTCTTCGCCGGAAAATGGCAACTCATTCGGAACAAGCTTGAGGAGCTTCACTCCGGTCTAATCGCCGCCGAGAATTGCGATTCCGGCGAGAACCCTTCTCTTTCCCGGTTGGTTCCTTCCATTGTAGCCACCGTTAAGGAATGTCACGATCTGGGTCAGCGCTGCGTCGATTTCTCCTACAGTGGGAAGCTTCTGATGCAGAGTGATTTGGACATGGCGTTTGCGAAGCTCGATGGTCTCGCGAAGAAGCTCTCAGAGATATACAAAACGGGTATTTTGACAAATGGGTATGCGTTGGTTGTGTCAAAACCGAGTCTTGGTGCTTCTAAAGAGGACATGAGGTTCTATGTGAGAGACCTTTTGACAAGGATGAAGATTGGTGATTTGGGTATGAAGAAACAGGCCTTGAGGAACCTTCTAGAGGTTGTGGTGGAGGATGAGAAGTATGTGAAGGTGATTGTAGATGTTGGTGATGTTGTTCATTTGTTAGTGAGTTTTCTTGGTTCAGCTGAGGAGGAAATCCAAGAGGAAAGTGCTAAGGTTGTTTCTGTTGTTGCGGGTTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCGCCTTTGGTTCGGGTTTTGGATTGTGGTAGTGAGTTAGGGAAGGTTGCAGCTGCCAGGTGTTTGATGAAATTAACTGAGAATTCTGATAATGCTTGGTGTGTTTCAGCTCATGGGGGTGTCACTGCCTTGTTGAATATTTGTGGGAATGCAGATTGTAAAGGGGATTTGGTTGGTCCTGCTTGTGGGGTGTTAAGGAATCTTGTTGGTGTTGAGGAGATAAAGAGGTTTATGGTTGAGGAAGGTGCTGTGTCCACGTTTATTGGGCTTGTGAAATCAAAGGAGGAAACTATTCAGGTGAATTCCATTGGGTTCATTCAGAATATTGCCTCTGGTGATGAGGTTGTTAGGCAGATGGTGATAAGAGAAGGTGGAATCCGTGCTTTGTTGCGAGTTTTGGATCCTAAATGGTCCTATTCTTCTAAAACCAGGGAGATAGCAATGAGGGCTATTGAGAATTTGTGTTTTTTCTTCATCAAGTTCTATAAGTATTTTGATGAGTTATGGTTTTGTGGATCAGCTTTTATATTATGTTCGAAATGGGGAGGTTTTATGTCAGAGCTTGTTAAGTTTCTCAATGCAAAATCATTTGAGGTTAGAGAAATGGCAGCTGAAGCACTCTCTAGCATGGTTATGGTACCTAGAAATAGAAAGAGATTTGTTCAGGATGATCATAACATAGCCCTTCTTCTACAATTGCTTGACCCAGAGGAGGGAAATTCAGAGGCTGAAGTTTCTTCTGATGCCAAAAGACTTGTCAGGAAGCTATCCACAAACAGATTCCGCAGTATGTTGAATGGAATCTGGCACTCATGA 1542 0.4481 MGDEVFAGESKTTVAQPTGASLLRRALELICSLLSLSHSIRVFAGKWQLIRNKLEELHSGLIAAENCDSGENPSLSRLVPSIVATVKECHDLGQRCVDFSYSGKLLMQSDLDMAFAKLDGLAKKLSEIYKTGILTNGYALVVSKPSLGASKEDMRFYVRDLLTRMKIGDLGMKKQALRNLLEVVVEDEKYVKVIVDVGDVVHLLVSFLGSAEEEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVRVLDCGSELGKVAAARCLMKLTENSDNAWCVSAHGGVTALLNICGNADCKGDLVGPACGVLRNLVGVEEIKRFMVEEGAVSTFIGLVKSKEETIQVNSIGFIQNIASGDEVVRQMVIREGGIRALLRVLDPKWSYSSKTREIAMRAIENLCFFFIKFYKYFDELWFCGSAFILCSKWGGFMSELVKFLNAKSFEVREMAAEALSSMVMVPRNRKRFVQDDHNIALLLQLLDPEEGNSEAEVSSDAKRLVRKLSTNRFRSMLNGIWHS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi478g00009 513 SMART arm_5 354 398 IPR000225 GO:0005515
Sebi478g00009 513 SMART arm_5 229 269 IPR000225 GO:0005515
Sebi478g00009 513 SMART arm_5 313 353 IPR000225 GO:0005515
Sebi478g00009 513 SMART arm_5 187 228 IPR000225 GO:0005515
Sebi478g00009 513 SMART arm_5 270 312 IPR000225 GO:0005515
Sebi478g00009 513 Gene3D - 420 508 IPR011989 -
Sebi478g00009 513 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 425 484 - -
Sebi478g00009 513 Gene3D - 155 400 IPR011989 -
Sebi478g00009 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
Sebi478g00009 513 SUPERFAMILY ARM repeat 159 482 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi478g00009 Sebi-Chr478 206772 208506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi478g00009 141 390 U-box Gene Family AT2G23140 22.759 4.89e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi478g00009 - - psat:127100726 734.176