Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi476g00073 ATGGCCACCACGCAAGCTAGTGGTGGCAGCGGCGGCGGCGTTGCCATAATGCCAGGCACTGTAACCTCCACGGATCCTTCCACTTCGAGCACTTGCTCCAACACCTCCCTCCTCCTCCAATCGCCGATTCTCATATTCTCTCTGTTCCACAAAGCCATTAACTCTGAGCTCCAGTCCCTTCACCAAGCCGCCTTGGATTTCGTTTCCAACCACGATGATCCCTCTGACCTAAAATCCTTGTCCCACCGCTGTCACTTTCTTCGCACCATCTATAAGCACCACTGTAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCAAGCGCGTATTTTTTGGAACATGAGGGGGAGGGTCTTCTTTTCAATCAGTTGTTCGAGCTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCATTAGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGAACTACTTAGGTGCTTGTGCACTATTATTCCCAAAGAGAAGCTCCTTCATCAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGGAAGATGGACCTATCTGAAGAATTTTCTGACTTGTCTTCATTTAATGGGAGGCTTCAATTTATAACTGAAGTCTGCATCTTTCATAGGTGTATATTTACCCTGTCTGTCCATATTTTTGCCCTTAATTCTGGCAAAGTGCATTATGTGGGTGCCTTTTTGCATCATATTAAGGGTCTTGGACCACGTAGAAGGAGAATCAGTGATCAGAAATGTGAGCGAGTGTGCGCGTTCTTGCATGTGAGTCAGAGAGAGATAGAGAGAGTTGCATGTGTGTATGTAAGTCAATACATCCATGCTTATGAATCGGACATTGCATATATGTTGAGCTCCCATACTGAACAAATAATGAAAACCGTACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCACCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAAAGCGTATTACCATGGCTAGTAGGATCACTTAGTGAAACAGAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGGTTTATGTCCTGCCAGGAGATTGATGGAGACGGAAAGCACTAGCCTATCATTTTGCATGTGTGAACCTTCATTCAGTCCCAATGAAAAATCTTCGCACGTTAAACAAGATGATGCAAATAGCGACATTGGACCAGTCAAGCATGGAAATCCAGAACCAAAGCAAGACAATGATGCTTCTAACTTGATGGTAACAAGAGAAACTCTTAACTCACCTAATAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTGAACAGAAATCATCTAGGAGGTGGTTCTTTTTCCCTAACAAAGTCTCTGCGAGCCTTATCTGATTGTCCATCTGCACCTTTCCTCAATTCCAGTCTTTTTATGTGGGAAACTGATGTAGTCTCTGTTGACAATCAATTTACAACAAGGCCTATTGATAACATATTTAAATTTCACAAAGCCATCCGTAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAACTTAATGATTGTGATGATATTTTCATTCAGCAATTCACTGGTAGATTGTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGAATTAGAGTCAAAAGAGAATCTTCACAATGTGAGTCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTGGATATTTCTTCTGGACTCACTCAGCTTACTCGATTACATGAATTACTAAATAAAAGGATTTCGTCTGACCATCTAACCAACTGTTACTCTAATTATTCTGATTGCTCTGATACCATACAAAATTACAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTGACACTAGATCAGCATCTTCTTAGGGAGGAACTTGAATTATGGCCCTTGTTTGATAAACACTTTTCTGTGGAAGAACAAGATAAGATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGTTGCCATGGGCTACGAAAAACACTATGTTCAATGAGTGGCTTAATGAATGGTGGGAAGGACCTGCTTCATCTTTAAATATCACTACACCTCGAGACCATTCACCAGTGAAGTTAGAGCTTAAACTTAATAACTCCAATTATTTGAATGCAAGAGTATGGGATCCCTGTCTAATGTACTCATATTCAGGTGCTGATGCCTATGAAGACTCAGAGCATAGCTTTCAAGCCTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAAAACATATCTAATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGGAGGTGAATCTTCTAAAGGAAAAGATTTGTTGGAAACTTCTCCTTCATTTCGTGATCCAGAGAAAAAATCCTTTGGTTGCGAACATTACAAAAGAAATTGTAAACTCCGTGCTGCCTGCTGTGGAAAGCTATTCACCTGTAGGTTCTGCCATGACAAAGTTAGTGACCATTCAATGGATAGGAAGGCTACGACTGAGATGAGTGCATGCGCTGCCTTCAAACAGCCTGTCGGACCAGTTTGTGTAACACCTTCCTGTGGTCGTCTCTTAATGGCAAA 2948 0.4118 MATTQASGGSGGGVAIMPGTVTSTDPSTSSTCSNTSLLLQSPILIFSLFHKAINSELQSLHQAALDFVSNHDDPSDLKSLSHRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVASAYFLEHEGEGLLFNQLFELLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAEFLPWLASYISSDEHQELLRCLCTIIPKEKLLHQAIKQELSDLAETARKMDLSEEFSDLSSFNGRLQFITEVCIFHRCIFTLSVHIFALNSGKVHYVGAFLHHIKGLGPRRRRISDQKCERVCAFLHVSQREIERVACVYVSQYIHAYESDIAYMLSSHTEQIMKTVLKHFENEEAQVLPLARKLFSHQRQRELLYESLCLMPLKLIESVLPWLVGSLSETEVRSFLQNMYMAGLCPARRLMETESTSLSFCMCEPSFSPNEKSSHVKQDDANSDIGPVKHGNPEPKQDNDASNLMVTRETLNSPNNQSCCVPGLGVNRNHLGGGSFSLTKSLRALSDCPSAPFLNSSLFMWETDVVSVDNQFTTRPIDNIFKFHKAIRKDLEYLDVESGKLNDCDDIFIQQFTGRLCLLWGLYRAHSNAEDDIVFPELESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTRLHELLNKRISSDHLTNCYSNYSDCSDTIQNYNELSTKIQGMCKSIRVTLDQHLLREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWATKNTMFNEWLNEWWEGPASSLNITTPRDHSPVKLELKLNNSNYLNARVWDPCLMYSYSGADAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRKTYLIQNLMTSRWIASQQKSSQATGGESSKGKDLLETSPSFRDPEKKSFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMSACAAFKQPVGPVCVTPSCGRLLMA 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi476g00073 982 MobiDBLite consensus disorder prediction 461 493 - -
Sebi476g00073 982 MobiDBLite consensus disorder prediction 882 901 - -
Sebi476g00073 982 Pfam CHY zinc finger 917 973 IPR008913 GO:0008270
Sebi476g00073 982 Gene3D nmb1532 protein domain like 41 193 - -
Sebi476g00073 982 Pfam Hemerythrin HHE cation binding domain 568 728 IPR012312 -
Sebi476g00073 982 Pfam Hemerythrin HHE cation binding domain 46 175 IPR012312 -
Sebi476g00073 982 SUPERFAMILY ARM repeat 49 396 IPR016024 -
Sebi476g00073 982 CDD Hr-like 45 173 - -
Sebi476g00073 982 Gene3D nmb1532 protein domain like 564 765 - -
Sebi476g00073 982 CDD Hr-like 572 728 - -
Sebi476g00073 982 MobiDBLite consensus disorder prediction 882 911 - -
Sebi476g00073 982 SUPERFAMILY CHY zinc finger-like 910 961 IPR037274 GO:0008270
Sebi476g00073 982 ProSiteProfiles Zinc finger CHY-type profile. 910 978 IPR008913 GO:0008270
Sebi476g00073 982 MobiDBLite consensus disorder prediction 1 28 - -
Sebi476g00073 982 FunFam Zinc finger protein BRUTUS 563 774 - -
Sebi476g00073 982 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 611 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi476g00073 Sebi-Chr476 800505 808031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi476g00073 231 982 C2H2 Transcription Factor Family AT3G18290 48.526 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi476g00073 K16276 - cit:102626254 1017.68