Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi476g00065 ATGTTCAAAGAGTCAATCAGTCATAATCCTCCTCTCAAGTCTCTACAACTGGGGAAGCACTCCATTTACTTTGACTCTGGATTTGTGAAATCCATGATGGTTCAATACTCACTCTTGCGTTTCCTTGTTCTCTGTTATTCTTTGCTTCCTCTCTTGGCTGAAGATGGAAGGAAATACCAAAGGAACTGCCCAACATCTTTTCATTGCGGGAAATTTGGACACATCCAGTTCCCATTCACAAACAAAAACAACCTGGACTGTGGTTTGCCCATAAGGGGCTGTGATGATCAAAATGCAGCAACAGAAGTCCAGTTATCAAACCAAACATGGTATGAATTTGAATCCATCAATGGAAACAATTCAATTTCTGTCATAGACCATAAGCTTCAAAGGCTCTTGGCCTCTAGAAGTTGCAATGCCTTCACTTATAATATTCATGCTACCCGTCCTCCGAGCACTCCTGTACTGCATTTTCAGATCGAAATGGAACACAGTATAACACTGTTAAGATGCAGACACGCTTCTTATAGACCTAGCAATAAATACATAAAGTATACAAGCTGTAATGGCTACGATATCTACTATCATACTCAATCTCCTGAAACAGATGACATGTATACAGGCACTGAAAATGCATGTTCAACCATCCAGCTTCCAATTAAATCATCGCCCTCTATGGACTATTCCACAGGCACAGCCCTTTACAATTTGTTAACAGCTGGATTCCGCATAATATTATTGTTATCGGAGGATTGTGGTAAGTGCTATGAAAATGGAGGCCAATGTCAAGTTGACAAAGAATCATTATATTGTGCCGGTTCCAAAGAACAAGCAGATCCTCCTCAGCCGAGAAAAGCAGATCCTCCTGTACAAGCAGTTTCTCATGATAAACAGAAATGGTTTACGAAGGGTGTTATACTTAAAATAGGTTTAGCCGTTGGATTCCTAAACGTGATCACATTAAAGCTTGAGAAAGCAACAAACAAATTTGACGAAGCTAGAGAACTTGGAAGTGGAGGCTATGGGAATGTTTACTATGGAAAGCTCCATGATGGACGGGAAGTTGCTGTCAAGTGCCTATATGAGCACAACTACAGACAAGTGGAGCAGTTCATGAATGAAATAGAGATCCTTACACGTCTGCGCCATAGAAATCTTGTGTCCCTTTATGGCTGCAGTTCTCGGCACAGCCGTGAACTACTGCTTGTGTATGAATATATTCCAAATGGCACGGTTGCTTGTCATCTCCATGTTGATATAACCAGAGAAACGGATGAGATTAACTTGTCAAATCTAGCCATAAAGAAGATCCAAAAGCGCGCATTCTGTGAACTGGTAGATCCTTCCCTTGGCTTTGAGTTAGATCAAGAATTTAAAAGGAAAATAGTTTCAGTAGCAGAATTGGCGTTTCAGTGTTTGAAAGAGTACAAGCATGTGAGACCTTCAATGGTAGAAGTTTTGGAGGAGCTGAAGAGAATTGATTCTGGGGAGGATAAGCCAAAGAATATAAAGGAAGCAGATGTTAACCTCCCAGTGTAA 1539 0.4074 MFKESISHNPPLKSLQLGKHSIYFDSGFVKSMMVQYSLLRFLVLCYSLLPLLAEDGRKYQRNCPTSFHCGKFGHIQFPFTNKNNLDCGLPIRGCDDQNAATEVQLSNQTWYEFESINGNNSISVIDHKLQRLLASRSCNAFTYNIHATRPPSTPVLHFQIEMEHSITLLRCRHASYRPSNKYIKYTSCNGYDIYYHTQSPETDDMYTGTENACSTIQLPIKSSPSMDYSTGTALYNLLTAGFRIILLLSEDCGKCYENGGQCQVDKESLYCAGSKEQADPPQPRKADPPVQAVSHDKQKWFTKGVILKIGLAVGFLNVITLKLEKATNKFDEARELGSGGYGNVYYGKLHDGREVAVKCLYEHNYRQVEQFMNEIEILTRLRHRNLVSLYGCSSRHSRELLLVYEYIPNGTVACHLHVDITRETDEINLSNLAIKKIQKRAFCELVDPSLGFELDQEFKRKIVSVAELAFQCLKEYKHVRPSMVEVLEELKRIDSGEDKPKNIKEADVNLPV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi476g00065 512 Pfam Protein tyrosine and serine/threonine kinase 333 423 IPR001245 GO:0004672|GO:0006468
Sebi476g00065 512 SUPERFAMILY Protein kinase-like (PK-like) 317 418 IPR011009 -
Sebi476g00065 512 Gene3D Transferase(Phosphotransferase) domain 1 411 508 - -
Sebi476g00065 512 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 38 304 IPR044652 GO:0004672
Sebi476g00065 512 Coils Coil 316 336 - -
Sebi476g00065 512 Gene3D Phosphorylase Kinase; domain 1 314 406 - -
Sebi476g00065 512 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Sebi476g00065 512 ProSiteProfiles Protein kinase domain profile. 330 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi476g00065 Sebi-Chr476 696685 700978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi476g00065 418 499 Receptor kinase-like Gene Family AT1G25390 48.780 1.08e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi476g00065 PK_Tyr_Ser-Thr 3.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi476g00065 - - qsa:O6P43_025739 350.903