Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi476g00062 ATGAACCCAATAATCCTCTTGTCTACCCTGCTCAAGCCCTTCTGTTCTCCTCTTCTACAATCATACATCATTTTCTTCTCTCTTCTAACCACACTTACTTTGTCTTCTGTGGATCCAAAGTTCCAAGCTTGCGAGCCCAAGACCTGTGGCAATGGCCAAAACATAAGCTACCCATTTTACATCCAAGGGACACAAGAACCCTTTTGTGGGAATCCTGGTTTTGAGCTCAGTTGTGGCAAGAATGGCTTCCCAATTCTCAATCTTATCAATACCAACTACACAATTCATCAAATTTTCTACAACAACAACACACTCCGAGTGTCCAACCCCGTTTTTTCAGAATCAAACACCACTGCATGTATTGCTCCCACACAGAACATAACAATTGGAAAGTACAGGTTCCGATTTGCTCCCAACCAAAGGGATCTATTGTTGTTCTACGGCTGTGACTTAACATCGGTTGGTGAAGAGATGCAAGAGCACAGGATTGGGTGTTCTGCAGAAAACCGAACGAGTTCAGTTGTGGCCTTTTATAGGGAGCATCAGAATTTGAGCTTAGTGAGGGAGAATTGCAAGGGTAGTAGGTTAGTGAATGCAGTAGTAGAAGATGGGAAAAGAGGGATTCAAGAGGCACTGAAGAAAGGGTTTATGTTGAATTGGAATGCTTCTAACTGCAGCGAGTGCACCAACAGTGGAGGGAGGTGCGGGTTCGACCTTGACCCTGATACATATGCGTTCAGGTGCTACTGTCCTGACAGGGTTCATGCTGTGAAATGTGGTTCAAAAGCAAAGTTGAGTAAGACAGGGAAACTGAGCATAGGTTTAGGTGTTGGACTCACAAGCATCTTGATAATTGGGTTGCTTCTTCTGCTTTACAAAATAAAACACAGCTCCTCAGGTGGTGGATTCCAAACAAGAAATACTAACCCTTCAAATCCAGATGTAGAAAATGCCATGGCGTACTTTAAAGTTCCTGTCTTCTCATACAAGGAGCTTGAAGAAGCAACAAACCATTTTGACCATTATAGACAAATTGGAGATGGAGGCTTTGGAACTGTGTACTATGGGAAACTCCGAGATGGAAGGGAAGTTGCTGTCAAACACATGTATGAGCACAACTACAGGCGAGTAGAACAGTTCCTGAATGAAGTTAAGATCCTCACACGTTTGCGCCATAAAAATCTTGTGCAACTCTATGGCTGCACTTCACGAGATAGCCGTGACCTGCTGCTTGTGTATGAATATATTCCAAATGGGACTGTTGCTTGCCATCTACATGGAGAATTGGCAAAGCCTGGCTTACTACCATGGCATAAGGATGAAATCAACTTGTCAAATCTAGCCATAAAGAAGATTCAAGAAAGTGCATTAAGTGAGCTGGTTGATCCTTCTCTTGGTTTTGATTCAGATAATGAGGTTCAGAGGATGATAGTTTCAGTGGCTGAATTGGCTTTTCAATGTTTGCAACGGGACAAGGAATTGAGGCCTTCCATGGATGAAGCATTTGAGGTGCTGAGGAGAATTGAAAATGGGAAGGATGATGAGCCAAGACATCTAGAACTAGAAGAAGCTTCTGGGGTTTCACGCAGTAATGTAAAACCATCATTGCCAATCTCACCAGAATGGGATGATGTTGGATTATTGAAGAATATGAAGCCACCTAATTCTTCACCAATATCAGTTACTGATAACTGGGAAAGTAAATCTACTACGCCTAATGTCAGTAGTTAA 1731 0.4263 MNPIILLSTLLKPFCSPLLQSYIIFFSLLTTLTLSSVDPKFQACEPKTCGNGQNISYPFYIQGTQEPFCGNPGFELSCGKNGFPILNLINTNYTIHQIFYNNNTLRVSNPVFSESNTTACIAPTQNITIGKYRFRFAPNQRDLLLFYGCDLTSVGEEMQEHRIGCSAENRTSSVVAFYREHQNLSLVRENCKGSRLVNAVVEDGKRGIQEALKKGFMLNWNASNCSECTNSGGRCGFDLDPDTYAFRCYCPDRVHAVKCGSKAKLSKTGKLSIGLGVGLTSILIIGLLLLLYKIKHSSSGGGFQTRNTNPSNPDVENAMAYFKVPVFSYKELEEATNHFDHYRQIGDGGFGTVYYGKLRDGREVAVKHMYEHNYRRVEQFLNEVKILTRLRHKNLVQLYGCTSRDSRDLLLVYEYIPNGTVACHLHGELAKPGLLPWHKDEINLSNLAIKKIQESALSELVDPSLGFDSDNEVQRMIVSVAELAFQCLQRDKELRPSMDEAFEVLRRIENGKDDEPRHLELEEASGVSRSNVKPSLPISPEWDDVGLLKNMKPPNSSPISVTDNWESKSTTPNVSS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi476g00062 576 SUPERFAMILY Protein kinase-like (PK-like) 319 429 IPR011009 -
Sebi476g00062 576 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 311 415 - -
Sebi476g00062 576 Pfam Wall-associated receptor kinase galacturonan-binding 44 108 IPR025287 GO:0030247
Sebi476g00062 576 MobiDBLite consensus disorder prediction 553 576 - -
Sebi476g00062 576 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Sebi476g00062 576 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 438 IPR044652 GO:0004672
Sebi476g00062 576 Pfam Protein tyrosine and serine/threonine kinase 342 438 IPR001245 GO:0004672|GO:0006468
Sebi476g00062 576 Gene3D Transferase(Phosphotransferase) domain 1 426 528 - -
Sebi476g00062 576 Pfam Wall-associated receptor kinase C-terminal 182 252 IPR032872 -
Sebi476g00062 576 MobiDBLite consensus disorder prediction 522 576 - -
Sebi476g00062 576 ProSiteProfiles Protein kinase domain profile. 339 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi476g00062 576 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi476g00062 Sebi-Chr476 685907 691533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi476g00062 439 576 Receptor kinase-like Gene Family AT1G25390 47.826 1.60e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi476g00062 PK_Tyr_Ser-Thr 9.1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi476g00062 - - aip:107643858 547.74