Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi476g00045 ATGGACATGGATGTTTGCCGGAATGTATCACTTTCCGGTGACTGTCAGCAACAACTTTCTACCCTTGATGACCTTTTCTCTGCCCAGAACACGGAAGTGGATTTTGGCATGGAATGGCTATCAGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGTCTCTTGGCCCCTGCATCTGCTGGTGTTGAAAATACAAGTACAACCAACACCAAAGCTTCAAGCACAATACAGAGACCCATGCAAAATCGTTCTTCTTTGCAAAATTTTGCTGTACCTGGGAAGGCCAGAAGCAAAAGGAAAAGGCTTTCAGCTCCTAGAACAAGAGACACTTTAAGCACTTGGTCACACCACATATTAGGCACACAGAGTGATGGCTTGAGTTCAGACCCTCCTCTGCTGAAACAGGCTTATTGGTTAGCTGATAGTGAACTCATTGTCCCTAAAAAGAATGATGAGCAAGAAAGGGTAGCCAAAAGTGGGGAAGTGGAGAAGGAGAACTTAGGGGATTCTGAACTTGAAATTAACAACAATGGGCAGCATTCAATTCCAAGGAGGTGCACCCATTGTTTGGCTCAGAGGACCCCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAAAGTCCTACTTTTGTAAGCTACTTGCATTCTAATTCCCACAAGAAAGTTATGGAGATGAGAATGGCTGTTCTATCTACTGATGAGCAGTAG 777 0.4492 MDMDVCRNVSLSGDCQQQLSTLDDLFSAQNTEVDFGMEWLSVFVEDCFSSKPSCLLAPASAGVENTSTTNTKASSTIQRPMQNRSSLQNFAVPGKARSKRKRLSAPRTRDTLSTWSHHILGTQSDGLSSDPPLLKQAYWLADSELIVPKKNDEQERVAKSGEVEKENLGDSELEINNNGQHSIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSTDEQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi476g00045 258 SMART GATA_3 181 235 IPR000679 GO:0006355|GO:0043565
Sebi476g00045 258 ProSiteProfiles GATA-type zinc finger domain profile. 181 217 IPR000679 GO:0006355|GO:0043565
Sebi476g00045 258 Gene3D - 177 251 IPR013088 GO:0006355|GO:0008270
Sebi476g00045 258 Pfam GATA zinc finger 187 221 IPR000679 GO:0006355|GO:0043565
Sebi476g00045 258 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 245 - -
Sebi476g00045 258 FunFam GATA transcription factor 176 258 - -
Sebi476g00045 258 CDD ZnF_GATA 186 233 IPR000679 GO:0006355|GO:0043565
Sebi476g00045 258 MobiDBLite consensus disorder prediction 64 92 - -
Sebi476g00045 258 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Sebi476g00045 258 PANTHER GATA TRANSCRIPTION FACTOR 22 254 - -
Sebi476g00045 258 MobiDBLite consensus disorder prediction 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi476g00045 Sebi-Chr476 513967 515023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi476g00045 37 249 C2C2-Gata Transcription Factor Family AT4G32890 44.495 4.35e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi476g00045 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi476g00045 - - pvu:PHAVU_004G079200g 377.867