Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi476g00002 ATGGATAGGCTCATAAGGTTAGATCCATCAAACATAGTCCTAATCAGGGTTGAACCAGGGCAAAAGTGCCATGGCAAGATCACCTTAAGAAATGTCATGTACACCATGCCAGTGGCATTTAGGCTTCAGCCATTGATCAAGAACCGTTACACAGTGAAACCACAATCAGGGATCATATCCCCTTTGGCCACACTCATCATAGAGATCATCTATATTCCTCCACCAGGCTCTTATCTCCCCCACACTTTTCCTCACTCAGATGATTCTTTCCTTCTCCATAGTGTCTTGGCTCCTGGTGCAGCCATCAAAGAACCTTCTTCCATGTTTGATGCTATTCTGGCTCAGCTTGTTGAAGATGGTTCAATGGATGACATCAGAGAGGTGCTGGAAAAAAGTGACCCATCATGGAAGGCTGTGAACTCTACAGACCCACAAGGTCAAACTTTACTTCACTTAGCCATTTCAAGAGGAAGGGCTGATCTTGTTCAATTACTCCTTGAATTTGAGCCTGATGTAGAAGCTCCAAGTCGTTCTGGCTCAACCCCACTTGAGGTTGCATCTTCCTCTGGTGAAGCTTTAATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACAGAACGATCAAAATCATCCATTTATGGACCAATCCATTACGCAACAAGAGAAGGACACATGGAGGTTTTAAGGCTTCTTTTACTCAAAGGTGCCAAAGTGGACACACTCACAAAAGATGGTAACACAGCCTTACACCTTGCTGTTGAAGAATGCAGAAGAGACTGTGCTAGGCTCCTACTAGCAAATGGTGCAAGAACTGATATAGGAAATATCAGAGAAGGTGACACCCCTTTGCACATAGCAGCTGCCATAGGAGATGAGAACATGGTCAAGCTCTTGCTCCAAAAGGGTGCCAACAAATATGTGAGGAACAAACAAGGGAAGACTTCATATGATGTTGCAGCTGAGAATGGCCATGCACGTCTCTTTGATATGCTTCGTTTAGGGGACAACTTGTGCGTAGCTGCGAGAAAAGGAGAAGTGAGGACAATCCAAAAGGTTCTTGAGAGTGGTGCAGCCATCAATGGAAAGGACCAACATGGATGGACAGCACTGCACAGAGCATGCTTTAAAGGGAGAAATGATGCAGTTAGGTTCCTTGTGGAGAAAGGGATAGATGTGGATGCAAAGGATGAAGATGGGTACACAGCATTGCACTGTGCAGTTGAGTCAGGACATGTAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCAGATGTTGAAGCCAGGACTAACAAAGGTGTGAGTGCTTTACAAATAGCAGAGTCATTGCATTATGTGGGGATCACAAGGATACTTGTTAATGGTGGGGCTAGCAGGGAAAGTTTAGGTCAAGTACCAATATCACCTGCTAAAATTCCATTTGGGACTAAAGTGGAAGCTGGAGGTATGATGATGAAGAAGAAGGTGGGTAGAACAAGAATGCTAAGGGGTAGCTTTGATCGTTCATTGGCTTTGGCTGTGATCTAG 1524 0.4455 MDRLIRLDPSNIVLIRVEPGQKCHGKITLRNVMYTMPVAFRLQPLIKNRYTVKPQSGIISPLATLIIEIIYIPPPGSYLPHTFPHSDDSFLLHSVLAPGAAIKEPSSMFDAILAQLVEDGSMDDIREVLEKSDPSWKAVNSTDPQGQTLLHLAISRGRADLVQLLLEFEPDVEAPSRSGSTPLEVASSSGEALIVELLLAHKANTERSKSSIYGPIHYATREGHMEVLRLLLLKGAKVDTLTKDGNTALHLAVEECRRDCARLLLANGARTDIGNIREGDTPLHIAAAIGDENMVKLLLQKGANKYVRNKQGKTSYDVAAENGHARLFDMLRLGDNLCVAARKGEVRTIQKVLESGAAINGKDQHGWTALHRACFKGRNDAVRFLVEKGIDVDAKDEDGYTALHCAVESGHVDVTEFLVKKGADVEARTNKGVSALQIAESLHYVGITRILVNGGASRESLGQVPISPAKIPFGTKVEAGGMMMKKKVGRTRMLRGSFDRSLALAVI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 215 243 IPR002110 GO:0005515
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 244 276 IPR002110 GO:0005515
Sebi476g00002 507 Gene3D - 114 276 IPR036770 -
Sebi476g00002 507 Gene3D - 403 453 IPR036770 -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 398 430 - -
Sebi476g00002 507 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 131 IPR000535 -
Sebi476g00002 507 PRINTS Ankyrin repeat signature 414 428 IPR002110 GO:0005515
Sebi476g00002 507 PRINTS Ankyrin repeat signature 279 294 IPR002110 GO:0005515
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 278 310 IPR002110 GO:0005515
Sebi476g00002 507 Gene3D - 277 333 IPR036770 -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 365 397 IPR002110 GO:0005515
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 365 397 - -
Sebi476g00002 507 Gene3D - 334 402 IPR036770 -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 278 304 - -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 398 430 IPR002110 GO:0005515
Sebi476g00002 507 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 115 327 - -
Sebi476g00002 507 SUPERFAMILY PapD-like 2 110 IPR008962 -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 215 239 - -
Sebi476g00002 507 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Sebi476g00002 507 Pfam Ankyrin repeats (3 copies) 215 272 IPR002110 GO:0005515
Sebi476g00002 507 Pfam Ankyrin repeats (3 copies) 125 205 IPR002110 GO:0005515
Sebi476g00002 507 Pfam Ankyrin repeats (3 copies) 337 428 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 278 307 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 145 174 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 211 240 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 398 427 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 431 460 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 365 394 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 311 339 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 244 273 IPR002110 GO:0005515
Sebi476g00002 507 SMART ANK_2a 178 207 IPR002110 GO:0005515
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 244 275 - -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 145 174 - -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 178 210 IPR002110 GO:0005515
Sebi476g00002 507 SUPERFAMILY Ankyrin repeat 139 464 IPR036770 -
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Sebi476g00002 507 ProSiteProfiles Ankyrin repeat region circular profile. 178 204 - -
Sebi476g00002 507 Gene3D Immunoglobulins 2 113 IPR013783 -
Sebi476g00002 507 Pfam Ankyrin repeat 279 304 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi476g00002 280 453 Ion Channels AT4G32500 29.570 1.85e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi476g00002 - - gmx:100782444 765.377