Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00067 ATGGTGGGTGGTAACAACAATTCGAGGCAATACAATGATGCAACTTCTACCAAAATATTTGTTGGAGGGTTAGCGTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCATAGAGGCTGTTGTTATCACAGACAAGAACACAGGGAGATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCTGAGGCAGCAAAGAAAGCATGTCAGAATCCCTCTCCAATAATTGATGGGAGAAGAGCAAACTGTAATATTGCAGCTATTGGTGCAAACAAGAATCGTCCACAGACTCCTCAATCTGGACGGTTTAGAGCAGCACCTGGAATGTTGGCTTCACCTGCTTATCATGGCCCTTCCTCTACATTTGTACATCATCAAACCACTGAGCAATACACATTTCCTTATTCAACTTATGGGTACACTGGATATCCACAACCACGAGACACAATGTACCCTATG 477 0.4361 MVGGNNNSRQYNDATSTKIFVGGLAWETQRDTMRRYFEQFGEIIEAVVITDKNTGRSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIAAIGANKNRPQTPQSGRFRAAPGMLASPAYHGPSSTFVHHQTTEQYTFPYSTYGYTGYPQPRDTMYPM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00067 159 Gene3D - 3 110 IPR012677 -
Sebi475g00067 159 CDD RRM_RBM24_RBM38_like 17 92 - -
Sebi475g00067 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
Sebi475g00067 159 PANTHER BOULE-RELATED 8 157 - -
Sebi475g00067 159 SUPERFAMILY RNA-binding domain, RBD 10 109 IPR035979 GO:0003676
Sebi475g00067 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Sebi475g00067 159 SMART rrm1_1 18 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00067 Sebi-Chr475 803361 804353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00067 13 93 C2H2 Transcription Factor Family AT2G19380 41.975 2.05e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00067 - - gmx:100786226 269.626