Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00063 ATGGCATTAGCTCTGTTACCTTCTTCTTCCTCCTATTCCTCTTCGGCGCTGAGCCTGAAACACAAACCCAAATTTCTAGCTTCAGCCAAACGATTCGTTTCGCATTTCTGGCATCCAAGGTATTCATGCTTGGTACTGCTGCCCACAACTCTAGAACCTTCTTCTCCTCTCAGGAAAGCTAGGCTTTGTGTGGCAGCGGTGGTTTCAGAAGGGATTAACGGAGAAGAATCCCTGGACACAGAAAACGATGACGTTTTTCGAGAGGAAAAAGAAGAACGGCGGAGTAAAGTTCCCACTCCCAGACCATGTGAATTGTATGTGTGCAATCTCCCCAGAAGCTATAACGCAGCAAACTTACTTGATATCTTCAACCCTCACGGAACTATTCTATCTCTTGAGGTTTGCCGGAATGCTGAAACTGGTGAAAGTATGGGGTGTGGTTATGTCACAATGGGATCCATAAACTCAGCAAGAAATGCAATTGCTGCATTGGATGGATCAGATGTTGAGGGGCGCGAAATGCGGGTTAGATTTTCATCTGAGATGAATCTTGGAAGGAGGAATAATGAGAACATGAACTCCTCCCCCAAGAGAGCGTTATACTATGAAGCTCCCCATAAGTTGTATGTGGGCAATCTTGTTAGGGCTGTTAAACCTGAACAGTTGAGAAATCATTTTAGCAGATTTGGGAATGTGCTTAGTGTAAGAGTGTTGCATGATCATAATCAAGGGAAAAGAAGAGTCTATGCGTTTCTCTCTTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTTAATGGAACAGAATTTTATGGTCGTACCCTAGTAGTTAGAGAGGGTGTAGATAAGACTGAGCCTTAA 864 0.4398 MALALLPSSSSYSSSALSLKHKPKFLASAKRFVSHFWHPRYSCLVLLPTTLEPSSPLRKARLCVAAVVSEGINGEESLDTENDDVFREEKEERRSKVPTPRPCELYVCNLPRSYNAANLLDIFNPHGTILSLEVCRNAETGESMGCGYVTMGSINSARNAIAALDGSDVEGREMRVRFSSEMNLGRRNNENMNSSPKRALYYEAPHKLYVGNLVRAVKPEQLRNHFSRFGNVLSVRVLHDHNQGKRRVYAFLSFQSEAERDAAMSLNGTEFYGRTLVVREGVDKTEP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00063 287 Gene3D - 68 188 IPR012677 -
Sebi475g00063 287 SUPERFAMILY RNA-binding domain, RBD 203 285 IPR035979 GO:0003676
Sebi475g00063 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Sebi475g00063 287 SUPERFAMILY RNA-binding domain, RBD 95 189 IPR035979 GO:0003676
Sebi475g00063 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Sebi475g00063 287 Gene3D - 189 286 IPR012677 -
Sebi475g00063 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
Sebi475g00063 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Sebi475g00063 287 FunFam 30S ribosomal protein 2, chloroplastic 193 281 - -
Sebi475g00063 287 SMART rrm1_1 207 279 IPR000504 GO:0003723
Sebi475g00063 287 SMART rrm1_1 104 177 IPR000504 GO:0003723
Sebi475g00063 287 PANTHER OS02G0815200 PROTEIN 12 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00063 Sebi-Chr475 755992 757520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00063 105 286 Eukaryotic Initiation Factors Gene Family AT3G16380 30.978 8.65e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00063 - - gmx:100792560 311.612