Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00059 ATGGAGAGGCTTCAAGGACCCCTCAATTCTTATTTCTTTGGTGAGCATTTGGAAGTGAATTGTTTGGAGCAAGCTTTGGTTGATGCACAAAGTTTGAGACTTGAAGAGGAAGAACAACTTTTGATATCAAGTTTAGAGGATAACATGCCATTCCTGCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAACCAAGCTTTCAAACACTTTTGAGGCTGCAGCATCTCAAGAAACCATGGGAAGGGATAGCCTATATCCCCAGCATGGACACCCAACAACAAGTTCAAGCAGCAGCATTAGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAATCAGAAAGCAATGAGCTTCAACACCCACGTTCAGCTTCATGTGTTGAGAAACTGAACTGTTATGAGTGCAACCAGGAATTACCACCCAAAACAGCACAATCATGCCCCAAATCTCAGCCACCAGCAACAAGGGAAAAGAGAAAGAGAAAGAGAACAAGGCCAACTAAGAACAAGGAAGATGTGGAGAATCAACGAATGACCCACATTGCTGTTGAACGCAACCGACGACGCCAAATGAATGACCACCTCAGTGTTCTAAGGTCCATCATGCCCCCTTCCTATATTCAAAGGCCTTTTACATTGATATTCATGGGACAGGGTGACCAAGCTTCAATCATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCCCTTGAAGCACAAAAAAGGATAAGAAAAAATGAAGAGAGTGGTTCTTCCAATGGATTGTCTAAGGCATCATTATCAGTATCATCTGCTTATGGAATGAGGTCATCATCCACTGAAGAAGATGAGGTGAAGGCAGAAAACAAGTCAGATGCAGCAGACATAAAGGTCACCTTGATTCAAACCCATGTGAACCTGAAAATTGAATGCCAAAGGAGACCTGGGCAATTGATAAAGGTCATTGTTGCTTTGGAGGACCTTAGGCTAACCATTCTGCACCTTAACATCACCTCCTCCGAGGCTTCTGTCCTATACTCTCTCAATCTCAAGATTGAAGAAGACTGTAAACTAGGCTCAGCAAATGACATTGCAGAAGCAGTTCATCGTATATTCAGCTTTATTAATTGCAGCTAA 1161 0.4298 MERLQGPLNSYFFGEHLEVNCLEQALVDAQSLRLEEEEQLLISSLEDNMPFLQMLQSVESPQFFPLKEPSFQTLLRLQHLKKPWEGIAYIPSMDTQQQVQAAALELESCVTHDMLEMQSPVKSESNELQHPRSASCVEKLNCYECNQELPPKTAQSCPKSQPPATREKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSIMPPSYIQRPFTLIFMGQGDQASIIGGAIDFVKELEQLLQSLEAQKRIRKNEESGSSNGLSKASLSVSSAYGMRSSSTEEDEVKAENKSDAADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSEASVLYSLNLKIEEDCKLGSANDIAEAVHRIFSFINCS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00059 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 245 IPR011598 GO:0046983
Sebi475g00059 386 Pfam Helix-loop-helix DNA-binding domain 186 245 IPR011598 GO:0046983
Sebi475g00059 386 MobiDBLite consensus disorder prediction 150 186 - -
Sebi475g00059 386 Coils Coil 19 39 - -
Sebi475g00059 386 Coils Coil 242 262 - -
Sebi475g00059 386 SMART finulus 191 251 IPR011598 GO:0046983
Sebi475g00059 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 261 IPR036638 GO:0046983
Sebi475g00059 386 PANTHER TRANSCRIPTION FACTOR FAMA 124 380 IPR044283 GO:0003700|GO:0010052
Sebi475g00059 386 Gene3D - 176 273 IPR036638 GO:0046983
Sebi475g00059 386 CDD bHLH_AtFAMA_like 188 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00059 Sebi-Chr475 707082 709086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00059 54 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.287 8.83e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi475g00059 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00059 - - gmx:100789928 572.392