Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00057 ATGGCTCCTTCATTAGAAACCAATAACGGTGAAATGAAGCAGCTTAAACATGAAGGAGGAGGACATGCCCAGGAAGAAGAAGAAGATGGCATCATATTTGCATTGAGCATGAGTTCTTCTGTGATACTTCCCCTGGCAGTGAGGACTGCAGTTGAGCTGGGAATCTTCGATATACTAGCTAGAGCAGGTGAGGGTCTCTCAGCAGAGGACATAGCAGTTAAGGTTGGGTCAAAGAACCCAGAAGCACCCTCAATGTTGGATCGTCTTCTGAGGTTGTTGACTAGTCACTCAATGCTATATTGTTCTCTTGCTGAACCTGAAGGTGAAGAACAGGGGAATGCTTCTTCTTCTCCTCCTCAGAGACTCTATAGGCTCGCCCCTAGATCCAAGTACTTTGTCACCGATGCTGATGGTGTGTCATTTGGACCTACACTCAGCTTGCCTCTTGACAAAGTCTTCTTGGAAAGCTGGACTGAACTAAAAGGAGCAATATTGGAAGGAGGTATACCATTCAATAGGGTTTATGGCATGCACGCATTTGAGTACCCAAGTGTAGATCCTAGGTTCAATGATGTTTTCAACAAAGCTATGGTCAATTGTACCACTATAGTTATGAAAAGGGTTCTTGAGTTCTATGAAGGTTTTGAGCACATCAACAAATTGGTGGATGTTGGAGGTGGTCTTGGGATCAATCTCAAGCTCATCACTTCAAAATATCCCCATGTCCAAGGTGTTAATTTTGACTTGCCTCATGTTATAGAGCATGCCCCAACATATGCTGGTGTGACACATGAGGGAGGAGATATGTTTGAGAGTTGGATACTTCATGACTGGAGTGATGAGCACTGTTTGAAGTTGTTGAAGAATTGCCATAAAGCTATTCCTAGTGATGGAAAAGTGATTGTTGTTGACTCAATTCTTCCTGTTTTGCCTGAGAGTACAACTATTGCTAAATCTAGCTTCCAAGCCGACCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGCATTGGCATTAGGTTCTGGATTTAGTGGTATTAGATTCGTCTGCTTTGTCTCTGGATTCTGGGTAATGGAGTTCTTCAAGTAG 1113 0.4322 MAPSLETNNGEMKQLKHEGGGHAQEEEEDGIIFALSMSSSVILPLAVRTAVELGIFDILARAGEGLSAEDIAVKVGSKNPEAPSMLDRLLRLLTSHSMLYCSLAEPEGEEQGNASSSPPQRLYRLAPRSKYFVTDADGVSFGPTLSLPLDKVFLESWTELKGAILEGGIPFNRVYGMHAFEYPSVDPRFNDVFNKAMVNCTTIVMKRVLEFYEGFEHINKLVDVGGGLGINLKLITSKYPHVQGVNFDLPHVIEHAPTYAGVTHEGGDMFESWILHDWSDEHCLKLLKNCHKAIPSDGKVIVVDSILPVLPESTTIAKSSFQADLLMMTQNPGGKERTQNEFMALALGSGFSGIRFVCFVSGFWVMEFFK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00057 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 370 IPR016461 GO:0008168
Sebi475g00057 370 Pfam O-methyltransferase domain 157 352 IPR001077 GO:0008171
Sebi475g00057 370 Gene3D Vaccinia Virus protein VP39 133 370 IPR029063 -
Sebi475g00057 370 Pfam Dimerisation domain 46 94 IPR012967 GO:0046983
Sebi475g00057 370 FunFam Caffeic acid 3-O-methyltransferase 13 132 - -
Sebi475g00057 370 PIRSF O-mtase 12 370 IPR016461 GO:0008168
Sebi475g00057 370 MobiDBLite consensus disorder prediction 1 24 - -
Sebi475g00057 370 FunFam Caffeic acid O-methyltransferase 133 370 - -
Sebi475g00057 370 PANTHER O-METHYLTRANSFERASE 35 356 IPR016461 GO:0008168
Sebi475g00057 370 SUPERFAMILY "Winged helix" DNA-binding domain 25 136 IPR036390 -
Sebi475g00057 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 138 368 IPR029063 -
Sebi475g00057 370 Gene3D - 12 132 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00057 Sebi-Chr475 688729 691206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00057 24 370 Monolignol Biosynthesis Gene Families AT5G54160 50.140 1.21e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00057 K13066 - gmx:100789402 550.051