Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00055 ATGGCAAAAACAGGGCAAATGATCCATGTTGCACATGTTGATTCAACAGAGAATCAACATAACCATAATCAACAAGAAATATTAGAAGAAAAAAGCTTCACCTATGCTATGCATCTGGTGAACTCTAGTGTGCTTTCTATGGCCATGCACTCAGCCATTGAGCTTGGCATTTTTGACATCATAGACAAAGCAGGTGTGAATACCAAGCTGTCTGCCAAGGACATTGCAGCCCATCTTCCTTGCAAGAATCCAGATGCAACCACAATGCTTGATCGTATCCTCAGGCTTCTAGCAAGTCACTCCGTGATTGATTGCACTATTGTTGGTGATGAACAAGGTCCTCCACCATATTTGCAGCGACTCTATAGCATAGCCCCTGTTGGCAAATACTTCGCTTGCAATGGTGGTGGTGGCTCACTTGGGCCTTTGATGGTTTTGACTCAGGACAAAGCCATCCTTCAAAGTTGGTACCAATTGAAAGATGCAATTTTGGAAGGAGGTATTCCATTCAACAGAGTCCATGAAAAACATGTATTTGAGTATTCGGACTTGAACCCAAGCTTCAATAAGCTTTTCATGGCAGCGATGACCAACCGTGCCACTTTAATTATGAAGAAGATTCTTGAATATTACAAGGGGTTTGAGCACATCAATAGGCTGGTGGACGTTGGTGGTGGCCTTGGGGTCACTATTAACATAATCACCTCTAAATACCCTCACATTCAGGGCATCAATTTTGATTTACCTCATGTAGTGGAACATGCCTCTCCCTATCCTGGTGTTGAACACGTGGGAGGGGATATGTTTGAAAATGTACCAGAAGGAGATGCCATTTTGATGATGTGTGTACTTCATGATTGGAGTGATGAATTCTGCTTGAAGGTGTTGAAGAACTGTTATGGTGCTATTCCTAATGATGGTAAGGTGATTGTTGTGGAAGGAGTTCTTCCATTTGAACCTGAGACTAGAGCTGCAGTGAAGAGCATTTCTCAATTTGATGTTCTGATGATGACTACAAACCCAGGAGGGAAGGAGCGAAGTGAAGAAGAATTCATGGCATTGGCAAAAGGAGCTGGATTCAATGGCGTTAGATATGCATGCTTTGTCTGTGACGTCTGGGTTATGGAATTCTTCAAGTAG 1140 0.4281 MAKTGQMIHVAHVDSTENQHNHNQQEILEEKSFTYAMHLVNSSVLSMAMHSAIELGIFDIIDKAGVNTKLSAKDIAAHLPCKNPDATTMLDRILRLLASHSVIDCTIVGDEQGPPPYLQRLYSIAPVGKYFACNGGGGSLGPLMVLTQDKAILQSWYQLKDAILEGGIPFNRVHEKHVFEYSDLNPSFNKLFMAAMTNRATLIMKKILEYYKGFEHINRLVDVGGGLGVTINIITSKYPHIQGINFDLPHVVEHASPYPGVEHVGGDMFENVPEGDAILMMCVLHDWSDEFCLKVLKNCYGAIPNDGKVIVVEGVLPFEPETRAAVKSISQFDVLMMTTNPGGKERSEEEFMALAKGAGFNGVRYACFVCDVWVMEFFK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00055 379 Gene3D - 14 131 IPR036388 -
Sebi475g00055 379 Pfam O-methyltransferase domain 156 361 IPR001077 GO:0008171
Sebi475g00055 379 PANTHER O-METHYLTRANSFERASE 36 364 IPR016461 GO:0008168
Sebi475g00055 379 PIRSF O-mtase 13 379 IPR016461 GO:0008168
Sebi475g00055 379 Gene3D Vaccinia Virus protein VP39 134 379 IPR029063 -
Sebi475g00055 379 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 37 379 IPR016461 GO:0008168
Sebi475g00055 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 377 IPR029063 -
Sebi475g00055 379 FunFam Caffeic acid O-methyltransferase 132 379 - -
Sebi475g00055 379 Pfam Dimerisation domain 47 98 IPR012967 GO:0046983
Sebi475g00055 379 FunFam Caffeic acid 3-O-methyltransferase 15 131 - -
Sebi475g00055 379 SUPERFAMILY "Winged helix" DNA-binding domain 30 133 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00055 Sebi-Chr475 669787 671618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00055 26 379 Monolignol Biosynthesis Gene Families AT5G54160 49.860 6.20e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00055 K13066 - gmx:100788873 604.364