Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00043 ATGGGGAACCCAGCATCCATGGTGGAAACAGTGCCTGTAGGTTACAGATTTCATCCAACTGATGAAGAGCTTGTGGGTCACTACTTGAAGCACAGGTTGCTTGGTGATGATTCCGGAGTGCACAATATCATAGCTGAGGTTGATGTTTGCAATCCTCTTGATTTGAAATGCACAAAAAGCATGAGGTGTAACAGGAAAACCAAGACTGGGTACTGGAAGATCACTGGTAAAGACCGTAACATCAAGACCAGAGTCACCAATAAGGTTATTGGCACAAAAAAGACTCTGGTTTTCTACAAGAGTTGTGGTCGTCGCCGTGACAAGACCAATTGGGTCATTCATGAATATCATGCAGTTACCTTTCCTAATGACAAGAGAGATTTTGTCTTGTGTCGCTTAATTAAGAAACCAGAGAAAACAGCAGAAGGGGGTGCTGATGAATTAATACATGATGAAGGGGAGCCAAGTAGCCATGTTGCTTCTGACTATGAAAGCAAGGCAACAGCAGATAGGGATCCAGATGTATGTGCTTCATCAGAAGTGAATTTGGAATCATTCTTTCCAGCACCACCTCTAGCAGAGGAATATGACTTCCTCTTACCACAGCAGTCTCCAGTTGTCACTGAAGAGGCGCCAAATTTCCAAGATTACTCATTTCTGGATTCCTTTTTCTGGGGATGA 681 0.4347 MGNPASMVETVPVGYRFHPTDEELVGHYLKHRLLGDDSGVHNIIAEVDVCNPLDLKCTKSMRCNRKTKTGYWKITGKDRNIKTRVTNKVIGTKKTLVFYKSCGRRRDKTNWVIHEYHAVTFPNDKRDFVLCRLIKKPEKTAEGGADELIHDEGEPSSHVASDYESKATADRDPDVCASSEVNLESFFPAPPLAEEYDFLLPQQSPVVTEEAPNFQDYSFLDSFFWG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00043 226 MobiDBLite consensus disorder prediction 142 164 - -
Sebi475g00043 226 ProSiteProfiles NAC domain profile. 11 136 IPR003441 GO:0003677|GO:0006355
Sebi475g00043 226 Gene3D NAC domain 50 141 IPR036093 GO:0003677|GO:0006355
Sebi475g00043 226 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 158 - -
Sebi475g00043 226 Pfam No apical meristem (NAM) protein 56 117 IPR003441 GO:0003677|GO:0006355
Sebi475g00043 226 Pfam No apical meristem (NAM) protein 12 51 IPR003441 GO:0003677|GO:0006355
Sebi475g00043 226 SUPERFAMILY NAC domain 6 136 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00043 Sebi-Chr475 497471 498862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00043 5 143 NAC Transcription Factor Family AT4G35580 39.881 3.84e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi475g00043 NAM 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00043 - - ccaj:109803958 261.922