LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi475g00042	ATGGATGGTCCTTTTGACATGATTAGTGCTATTCACCCAGGGAAAGACTCATGGAGGTTAAGAGTGAGGGTTGTTTGCCTATGGGAGATGTGTTCTATTGCTGAACCAACTAAGCCATTTGCCATTGATATGGTGTTGATGGACATTGAGGGTGGAAAGATCCAAGCATCAATTCGGAAACCTATGATGAAGAAGTTTAGGAACTTGATTGCTGAGGGTGAGGTGTACACAGTGCTGAGCTTTGCCATGATAAAGAATGTTGGAAGTTATCGTGCCTCAAGGCATGATTATAAACTATTATTCAGTGCCAAAACGAAAGTTTACCCATCTCAGTGTGATGTTATACCAGTTGTTGGATTATCTCTCATGAGTTCTGAGCAAATATCAAAGACTAATGGAGAATCTAATTTCCTTTTTGATTTTATGGGTATTTTAACTGTTGTTTCTGCTGAGAAAGAGGTTGAAACCGATGGGAGGAAGACCAGGATGATGGAAATAGAGCTTGCTGATGACAAAGGGAGAATGAGATGCACCGTATTTGGGAATTATGTGGACACCTTGAAAGAGTATGTTGCCTCAGGTGTTGCTCCATTACATGTGGTTGTGGTTCAACTTTTTAAAGTTAGATTATATAGGGGCAATGTTGTTTTACAAAATGTGAACAACACATCTAGGATCTTGTGGAATCCTGATATCCCTGAGGCCATTGATTTTAGGAATAGTTTGGCCTGTCATGGAATTGACTCTGATGTTGAGATTGGTGTCATTGAGGGGGGAAACCGTGTTGTGCCTCTGTCTGATGAATTCCTTAGATTGTATCCAAGAAAATATGTCAATGAATTACAGATAACTGAGGAGGGGGGCATTTTCATAGTGGACGCCACTATTGTTTTTGTTATGAATGAAGAACAATGGTGGTATGGGGCTTGCAAGTGTCACAAGGCAGTTACACTTGACGGTGGCCTTTACTACTGTTCTAATTGCTCAACCCATGTAGTTGAAGTTACCCCAAGATATAAGTTGAGGGTTGAAGTTTTCCGTTGGGATGACTCCGCTTCTTTTATTTTGTTTGACTCTGATTGTGTTTATTTGCTGGGGAAGACTTGCAAGGAACTACTCAGGGGTTTAAAGGCTGGTGAGCATCCACCTGACTTTAGGGGTCTTATTGGAAAGGATCTTCTCTTCAAGGTAGAGAAAACAATTGAGTATGCATTCAGCTACGATGACTCTTTCAAAGTTAAGAAGGTTTGTGACGACAAGGAAATTATTCAACTATTTAAGAAATCCTCAAACATTGAGACTCCTCTGAAGTCTAAGTTTCAGCCTCCTTTCCCTAAGCTTGGTGTGGAAGAAAATTCTGAAAATCCAAACGAAGGCATGTCTGACAGTCTTGAGGCCATTGGTGATGTGTCTCTCAATTCTGCTGGCTTTACTAATGCATCTTCTAGCTCCAGTGTCCAGATGTCCCTTCGCAGTAGCTCCAGTGTGCAATGCTTTATTCCCAGTAGCTCCAGTGAGCAGTGCTCAAACCCCAGGAATGATGATGAAGCTGATGAAGACACTCCACTTTCATATAAGCGAGCCAGGCTGAGGCCGATCAAGCTAGAGGAAGACTAG	1617	0.4174	MDGPFDMISAIHPGKDSWRLRVRVVCLWEMCSIAEPTKPFAIDMVLMDIEGGKIQASIRKPMMKKFRNLIAEGEVYTVLSFAMIKNVGSYRASRHDYKLLFSAKTKVYPSQCDVIPVVGLSLMSSEQISKTNGESNFLFDFMGILTVVSAEKEVETDGRKTRMMEIELADDKGRMRCTVFGNYVDTLKEYVASGVAPLHVVVVQLFKVRLYRGNVVLQNVNNTSRILWNPDIPEAIDFRNSLACHGIDSDVEIGVIEGGNRVVPLSDEFLRLYPRKYVNELQITEEGGIFIVDATIVFVMNEEQWWYGACKCHKAVTLDGGLYYCSNCSTHVVEVTPRYKLRVEVFRWDDSASFILFDSDCVYLLGKTCKELLRGLKAGEHPPDFRGLIGKDLLFKVEKTIEYAFSYDDSFKVKKVCDDKEIIQLFKKSSNIETPLKSKFQPPFPKLGVEENSENPNEGMSDSLEAIGDVSLNSAGFTNASSSSSVQMSLRSSSSVQCFIPSSSSEQCSNPRNDDEADEDTPLSYKRARLRPIKLEED	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi475g00042	538	Gene3D	-	4	109	IPR012340	-
	Sebi475g00042	538	PANTHER	OS03G0429900 PROTEIN	7	496	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Sebi475g00042	538	CDD	RPA1_DBD_A_like	19	107	-	-
	Sebi475g00042	538	Gene3D	-	114	249	IPR012340	-
	Sebi475g00042	538	CDD	RPA1_DBD_C	285	416	IPR047192	-
	Sebi475g00042	538	SUPERFAMILY	Nucleic acid-binding proteins	5	110	IPR012340	-
	Sebi475g00042	538	MobiDBLite	consensus disorder prediction	511	538	-	-
	Sebi475g00042	538	MobiDBLite	consensus disorder prediction	437	463	-	-
	Sebi475g00042	538	Pfam	Domain of unknown function DUF223	44	113	IPR003871	-
	Sebi475g00042	538	Pfam	Replication factor-A C terminal domain	290	377	IPR013955	-
	Sebi475g00042	538	SUPERFAMILY	Nucleic acid-binding proteins	124	246	IPR012340	-
	Sebi475g00042	538	Gene3D	-	271	429	IPR012340	-
	Sebi475g00042	538	MobiDBLite	consensus disorder prediction	500	538	-	-
	Sebi475g00042	538	SUPERFAMILY	Nucleic acid-binding proteins	273	418	IPR012340	-
	Sebi475g00042	538	CDD	RPA1_DBD_B_like	140	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi475g00042	Sebi-Chr475	490235	492823	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi475g00042	8	372	Core DNA Replication Machinery Family	AT5G45400	23.785	6.14e-15	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi475g00042	-		-	lja:Lj6g3v0884310.1	414.075