Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00040 ATGGATAGCACATTTCCCATACTAGATTTCATGCCTGTAGGATTCAGATTTCGTCCCACAGATGAAGAGCTTGTGGAGCACTACCTCAAGCACAAGTTGCAGGGTGATGATTTCCCTGTTCATATCATCCCTGAGCTTGATCTTTGCAAGTATGAGCCTTGGGAAATACCAGCTTGCTCGGTGATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAAGAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGCTTCTGGAAAGCCACTGGGAATGACCGTAACATCAAGACCAGAGGCACCAACAATGTCATTGGGACCAAGAAGACTCTTGTTTTCTATGAAGGCCGTGTTCCTTCTGGTGTCAAAACCAGTTGGGTTATTCATGAGTATCATGCTGTTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTAATGCAATGATATGTGATGAAGGGGAGCCCAGTAGACACATAGCTTCCGATTATGAAAATGAAGCAACAACAGAAGGAATTCCAGATGTAGGTGGTACTTTGCCAGAAGTGAATATGGAATCAATCTTTCAGCAACCGCAACAGGCAGAGAATTACTTCCCCTCAAACCAACAGTCTCCAGTTGGAATTGAGCAGGAAGCATCTTTCCCAAACTCCCCACTTCTCAATGCCTATTTTAGAAATGAAAACAGCAGTATGCAGACTACAGAAGAGGAAGATGAGTTCGTGAATTCAATTTTAGTTGATGGGAATTTTTTTATCAGAGAAGAAAGAAGAAATGCTTTTGTCAATAGTTCCACTCAGTCAGAGTCATTGAGAAGGGTATACCATGAAAGCAGTGACACAGATGCTGAAGTAGCCTCTGCACTGTGTGGCAATATTCTGGATACTTCAACAGTACATAATGGACATTCTAGTTCAGGTGAATATCATGCATCAAAAATGTTTAAATCAGCACATGATTCTGTGCATGGTGGCACACGTCTTCCATCTTCTATTCACGATGCAAGCAAAGAGAAAAGGGAGAGTACCTTTCGAGATGATGTCTGGGGAGTGGAGACATCCTCTTGTGACTCAACTGCAGATAAGCCTTTGGAGATCAATTCTATTGAAATTTCTAGTTCTCCTTCCACTCTAAGGAGAATGAAAAACCAGTATCATCCAAAACCAGACAACTTTATATCACAAAGAGCTGCTGCAAGAAGATCTCAAACACAGAGGAAGGCTGAGAAGGAATCACCCATCATGGAATTAGAAAAAGATCAGAAAAATGCTCAGAATACTAGTTCGAGAGAGAATTTAGAAACCAAAAGCCATCAATCCTCTAATGCCAATAGAAAAGGTTCTTTCATCTGCTTGGAGACACCTTCATCAAGCCAAGGCCTATTTCCTCGCTCGGATACAGAAGTCTGGTACAATGTATCAAACCAGCTGAGTAGTAGGCTGTACACATGCAACAGTAGCATGGAGCCTGGCTTAGTTTCTTAG 1548 0.4199 MDSTFPILDFMPVGFRFRPTDEELVEHYLKHKLQGDDFPVHIIPELDLCKYEPWEIPACSVIKSDDPEWFFFSPRDYKYAKSKRFNRATKCGFWKATGNDRNIKTRGTNNVIGTKKTLVFYEGRVPSGVKTSWVIHEYHAVTFDDSQRTFVLCRLMKKAEKKAEGGTNAMICDEGEPSRHIASDYENEATTEGIPDVGGTLPEVNMESIFQQPQQAENYFPSNQQSPVGIEQEASFPNSPLLNAYFRNENSSMQTTEEEDEFVNSILVDGNFFIREERRNAFVNSSTQSESLRRVYHESSDTDAEVASALCGNILDTSTVHNGHSSSGEYHASKMFKSAHDSVHGGTRLPSSIHDASKEKRESTFRDDVWGVETSSCDSTADKPLEINSIEISSSPSTLRRMKNQYHPKPDNFISQRAAARRSQTQRKAEKESPIMELEKDQKNAQNTSSRENLETKSHQSSNANRKGSFICLETPSSSQGLFPRSDTEVWYNVSNQLSSRLYTCNSSMEPGLVS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00040 515 Coils Coil 435 455 - -
Sebi475g00040 515 MobiDBLite consensus disorder prediction 338 365 - -
Sebi475g00040 515 MobiDBLite consensus disorder prediction 423 439 - -
Sebi475g00040 515 MobiDBLite consensus disorder prediction 387 467 - -
Sebi475g00040 515 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 350 - -
Sebi475g00040 515 MobiDBLite consensus disorder prediction 440 467 - -
Sebi475g00040 515 MobiDBLite consensus disorder prediction 387 402 - -
Sebi475g00040 515 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Sebi475g00040 515 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Sebi475g00040 515 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Sebi475g00040 515 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00040 Sebi-Chr475 464108 468003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00040 8 165 NAC Transcription Factor Family AT4G35580 54.601 1.24e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi475g00040 NAM 2.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00040 - - gsj:114390609 572.392