Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi475g00014 ATGGATACTATCAAGTCCTTCAAGGGGTACGGTAAAGTAGATGAGATAGAGCAACAAGCCTTTCAGAAGAAGACACGTAAGCGTGTGATAATCCTGATCGTCTCCTCCTTAGTTCTATTAGCGTTGATCATCGCCGCGGTAGTAGGAGTCGTCGTACACAAGCGCAACACCTCATCATCCTCCCCATCCGACTCGGCTCCCCAGACCGATACCCTGACTCGTGCTTCGCCACTATCTCCTCCCTCCCAAACTCCAACACCACCGACCCCGAAACACTATTCAAACTCTCCCTCCGCGTCGCCATTGATGAACTCTCGAAGCTCAAGAGCCTCCCTTCGAAGCTCAATGCCAATGGCGACAAGCGCCTCCAGAAGGCGATTGATGTTTGCGGCCGTCGTCTTCGACGACGCTCTGGACCGCCTCAACGACTCGATCTCCTCGATCTCTAGCGCCGGAAAGATCCTCTCTCCGACGACGATCGATAACGTCAAGACCTGGCTCAGTGCCGCCATCACGAACCACGACACGTGCCTGGACGCCATCGGCGAGTTGAACTCCACCGCCGCAAACGGTGTTCTCCAGCAAATGGAAGCCGCAATGAAGAACTCCACGGAGTTCTCGAGTAACAGTTTGGCGATCGTGAGCAGGATCCTAGGGTTGCTGGCGAAGATCGGCGCGCCGCTCCACAACCGGAGGCTGCTCGGAGAGTTCCCGGAGTGGGTGGGAGCGGCGGAGAGGAGGCTGCTGGCAGCGGATGGCAACGAGACGAAGCCGGACGCGGTGGTGGCGAAGGACGGGAGTGGACAGTACACGACGATCGGAGAGGCGCTGAAGGCGGTGAAGAAGAAGAACGAGAAGAGATTCGTGGTGTATGTGAAGAAAGGAGATTACGTGGAGAACATCGATTTGGACAAGCATACCTGGAATGTGATGATCTACGGCGATGGCATGACGGAAACCGTCATCTACGGTAGCCGGAATTTCATGGACGGCACGCCCACTTTTGAAACTGCCACTTTCGCTGTTAAGGGCAAGGGATTCATTGCCAAAAACATCAAGTTTGTGAACACTGCAGGAGCATCTAAGCACCAGGCTGTGGCATTGCGTTCTGGCTCGGATCGCTCAGTGTTTTACAGGTGCTCATTTGATGGCTTTCAGGACACCCTTTATGCACATTCCATGCGCCAGTTCTACCGTGAGTGTGAAATTACAGGTACCATAGACTTCATATTTGGTAATGGAGCTGCTATCTTCCAAAATTGCAAAATCATGCCTAGACAGCCTCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCCAACCAGAACACTGGAATTGTAATCCAAAAATCAACGATCACTACCCTAGACAATGACAATCTCACTGCTCCTACGTACCTTGGTAGGCCATGGAAGGATTACTCCACCACTGTTATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTAGGGTGGATGAGTTGGGTTGCCAATGTGGACCCTCCAAGTACCATCCTCTATGCTGAATACCAGAACAGTGGGCCAGGATCAGATGTGTCCCAGAGGGTAAAATGGACTGGTTACAAGCCCACTCTCGCGGACGATGAGGCAGGGAAGTTCACGGTGGAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCAAATGCTGATGTGCAGTTTGAGTCTACTTTGTGA 1707 0.5255 MDTIKSFKGYGKVDEIEQQAFQKKTRKRVIILIVSSLVLLALIIAAVVGVVVHKRNTSSSSPSDSAPQTDTLTRASPLSPPSQTPTPPTPKHYSNSPSASPLMNSRSSRASLRSSMPMATSASRRRLMFAAVVFDDALDRLNDSISSISSAGKILSPTTIDNVKTWLSAAITNHDTCLDAIGELNSTAANGVLQQMEAAMKNSTEFSSNSLAIVSRILGLLAKIGAPLHNRRLLGEFPEWVGAAERRLLAADGNETKPDAVVAKDGSGQYTTIGEALKAVKKKNEKRFVVYVKKGDYVENIDLDKHTWNVMIYGDGMTETVIYGSRNFMDGTPTFETATFAVKGKGFIAKNIKFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSMRQFYRECEITGTIDFIFGNGAAIFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDNLTAPTYLGRPWKDYSTTVIMQTDIGSFLKPVGWMSWVANVDPPSTILYAEYQNSGPGSDVSQRVKWTGYKPTLADDEAGKFTVESFIQGPEWLPNADVQFESTL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi475g00014 568 CDD PMEI-like_3 133 217 - -
Sebi475g00014 568 MobiDBLite consensus disorder prediction 55 117 - -
Sebi475g00014 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 133 218 IPR035513 -
Sebi475g00014 568 PANTHER PECTINESTERASE 116 558 - -
Sebi475g00014 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 89 217 IPR035513 -
Sebi475g00014 568 SMART PMEI_2 89 213 IPR006501 GO:0004857
Sebi475g00014 568 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Sebi475g00014 568 MobiDBLite consensus disorder prediction 55 79 - -
Sebi475g00014 568 MobiDBLite consensus disorder prediction 95 117 - -
Sebi475g00014 568 FunFam Pectinesterase 253 568 - -
Sebi475g00014 568 Pfam Plant invertase/pectin methylesterase inhibitor 125 213 IPR006501 GO:0004857
Sebi475g00014 568 SUPERFAMILY Pectin lyase-like 257 565 IPR011050 -
Sebi475g00014 568 Pfam Pectinesterase 259 553 IPR000070 GO:0030599|GO:0042545
Sebi475g00014 568 Gene3D - 253 568 IPR012334 -
Sebi475g00014 568 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi475g00014 Sebi-Chr475 133931 137026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi475g00014 1 562 Carbohydrate Esterase AT1G53840 53.401 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi475g00014 - - gmx:100784642 780.4