Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi474g00056 ATGGAAGCCGTAGCAAGAGAGAGGCTTAGCCCTGCTCCTCACTCATCCTCCGGTGACCGAGGTGGGGACGGTGAATTGTATTGTGAACTGTGGCATGCATGCGCGGGGCGAGTGTATGTTCCTGAGGTTGGAGAGAAGGTATTCTACTTGCCACAGGGTCACTTGGAGCAGGTTGCTGCTTTTACTCAACATCAGCAAGATGGTCACATGGAAATTCCAGTATATGATTTGCCTTTTAAGATCTTATGCAGGGTTATGTCTGTTCAGTTAAAGGCTGAAGCTTACACAGATGAAGTTTTTGCTCAAGTTACATTGCTTCCGGAGTCCAAGCAAGATGATCTTAGTTCAGAAGACACTAGTGAGATACCTCGCAGAACTAAACCCTACTCTTTTAGCAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGCGACATGCAGATGAATGCTTCCGCCCTCTGGACATGACTCTTCAAACACCAATGCAAGAGCTGGTTGCTAAGGACTTGCATGGGTTTGAGTGGCATTTTCGGCATATATATCGCGGTCAGCCGAAAAGACACTTGCTGACTAGCGGTTGGAGCACATTTGTTAATTCAAAAAAACTTGTCGCTGGAGATGCATGCATTTTCGTTAGGGGAGACAATGGAGAAATTCGTGTTGGGATTCGTCGAGCAACGAAACAACACAACAATGTAGCCACATCTTCATCTCTGATATCAGGCCATAGCATGCAACTTGGAATTTTGACCAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACGAATCCCTTTGAATTTATTATTCCTGTGAAAAACTACATGAAGTCAACTGAAGTGGACTATTCAATTGGAACGAGAGTACAAACGCTGCTACAAGTTGAAGAATCTACAAGAAGATATGCAGGTACTATAATTGGTATTGAAGATATCGATAAGATTAGGTGGCCTGGTTCAAAATGGAAATGTCTCAAGGTGCAATGGGATGCCATACTGAATACGTATGTTAATCCTGAGAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAACCTGTCAAGAATAAGCGCGTTCCTGTTCTCCCCCAACCAAACAAGGCACGTGCACTTAACCCGCCATTGCCTGGATTAAATGGCTTTGCCAATGATGGCACAGTTCAGAATTCAGCCAGGCCTGCATCTCAGAGAGTGGATAGGGAATTGCAAGGTCAAGATTACAATGGCTTATGTTCTCCACAACCTTTGCAAAAGCCACTATCAACAGATGTCCTCCTCCCAATGAAGAATCCAAATCAGCTTCCCTCTTTTATGCAAGACCATCTTCACCAATCTCTTGGAAGCTCAGTGTCATTTTCACATGAAGACATATCAACTTCCAATTCAAATGTGAAATCCACTCTTTCTGAATCCCAGGGATGGCCTCCCTCTGAATCTAAAGATGAAAATGATTTTACTTTTGGCCAACCTGGCAGCAGCAGCAGATTCAAACTTTTTGGGGTTAGCTTGATTGATAGGCAACCGGAGCTCCCTTCACCACAATTTTCTACGTTTAGCAAAATTTCTTGTCCTCCAATATGTGTTACCGCTGGGAAAACGTGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGATGGGAACTGCTCTTGGAAGAGCGATTGACCTCACCCGTTTAGGTGGATATGATGAGCTCATTTCTGAACTCGACCGGATGTTTGGTTTTGGAGGAAGCTTAATCAATGGAAGCAGCGGATGGCATGTGACCTGCATAGATGATGATGGAGATATGATGCTATTAGCGGATTACCCTTGGCAGGATTTCCAATCCGTGGTGCAAAAGATGATCATATGTCCCAAGGATGGTACTGACAATCCCAATCCAAGCTCCTCAGCAGATCCTTCAAAGCTTTAG 1965 0.4473 MEAVARERLSPAPHSSSGDRGGDGELYCELWHACAGRVYVPEVGEKVFYLPQGHLEQVAAFTQHQQDGHMEIPVYDLPFKILCRVMSVQLKAEAYTDEVFAQVTLLPESKQDDLSSEDTSEIPRRTKPYSFSKILTPSDTSTHGGFSIPKRHADECFRPLDMTLQTPMQELVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDACIFVRGDNGEIRVGIRRATKQHNNVATSSSLISGHSMQLGILTSASHAVATGSMFSVYYRPWTNPFEFIIPVKNYMKSTEVDYSIGTRVQTLLQVEESTRRYAGTIIGIEDIDKIRWPGSKWKCLKVQWDAILNTYVNPERVCPWWIEPLEPVKNKRVPVLPQPNKARALNPPLPGLNGFANDGTVQNSARPASQRVDRELQGQDYNGLCSPQPLQKPLSTDVLLPMKNPNQLPSFMQDHLHQSLGSSVSFSHEDISTSNSNVKSTLSESQGWPPSESKDENDFTFGQPGSSSRFKLFGVSLIDRQPELPSPQFSTFSKISCPPICVTAGKTCKKCRSVNRSCTKVLKMGTALGRAIDLTRLGGYDELISELDRMFGFGGSLINGSSGWHVTCIDDDGDMMLLADYPWQDFQSVVQKMIICPKDGTDNPNPSSSADPSKL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi474g00056 654 Pfam AUX/IAA family 471 634 IPR033389 -
Sebi474g00056 654 FunFam Auxin response factor 129 233 - -
Sebi474g00056 654 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Sebi474g00056 654 FunFam Auxin response factor 296 368 - -
Sebi474g00056 654 ProSiteProfiles PB1 domain profile. 555 638 IPR000270 GO:0005515
Sebi474g00056 654 SMART B3_2 131 233 IPR003340 GO:0003677
Sebi474g00056 654 MobiDBLite consensus disorder prediction 1 21 - -
Sebi474g00056 654 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Sebi474g00056 654 MobiDBLite consensus disorder prediction 466 500 - -
Sebi474g00056 654 Pfam Auxin response factor 259 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi474g00056 654 Gene3D - 296 369 - -
Sebi474g00056 654 Gene3D - 551 642 - -
Sebi474g00056 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi474g00056 654 SUPERFAMILY DNA-binding pseudobarrel domain 126 261 IPR015300 -
Sebi474g00056 654 CDD B3_DNA 130 231 IPR003340 GO:0003677
Sebi474g00056 654 Gene3D - 129 233 IPR015300 -
Sebi474g00056 654 SUPERFAMILY CAD & PB1 domains 559 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi474g00056 Sebi-Chr474 707306 716134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi474g00056 554 647 B3 DNA Binding Superfamily AT5G62000 44.681 2.51e-21 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi474g00056 AUX_IAA 2.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi474g00056 - - lja:Lj1g3v4764520.2 967.222