Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi474g00016 ATGGAGAATGCAAACGCATGTGGATTAGGGAGAACGAAATCGGATCAGCTAGTTGAATCGGTGGTAGCAGCGATGAAGTCGCCGGCAGCATCGAGTAGTGAATCAATAGGTGGTGGAAACTTGTCGAGGAAGTCAAGCCGGAGGATGATGACGGCGTCACCAGGTGGCGGGAAAAACACACACATAAGGAAGGCAAGGAGCGCACAGTTGAAGGTTGAATTGGATGAGGTTAGCAGTGGAGCGGCTCTTAGTAGAGCTTCCAGTGCAAGCTTGGGACTCTCATTCTCCTTCACTGGCTTCACTATGCCTCCGGACGAAATCGCTGACACCAAACCTTTCAGCGATGATGATATCCGATATCATGCGGTGCACAATGATACGATCCCTCTGAAGCTTCAAGCATCATGTGTAGCTGAGGATATAGAAGCCGGAAGTCATAAGCCAAAGTTTCAAACGGAACCTACTCTGCCAATATATCTGAAGTTCACGGATGTGACATACAAGGTAGTGATTAAAGGCATGACGACAACTGAGGAGAAAGATATCTTGAAGGGGATCACTGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCCTCAGGGAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGCCAGGGTAAATCATACCACAATAGGTGGCTCTATCACTTATAATGACCAACCATATTCCAAGTTCCTAAAGAGCAGTACTTACATGAAGTATGCATTTGGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCTCATCTAACAGTGAAAGAAACATTGACATATGCAGCCCGCCTAAAGTTGCCAAATACATTAACGAAAGAGCAAAAGGAAAAACGAGCTTTAGATGTCATCGTTGAGCTGGGCTTGGAGAGGTGCCAAGAAACTATGATAGGAGGTTCCTTCGTTAGAGGAGTATCCGGTGGAGAGAGGAAGAGAGTTTGTATCGGCAATGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACTGTAGTGACAACAATACATCAACCATCAAGCAGACTCTTCCATAAATTCGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCGGAAGCAATGGACTACTTCCAATGCATAGGGTGTACGCCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAACGATATTTCTGTACCATCAGAGTTAGAGGATAGAGTGCACATGGGAAATGCAGATGCTGAAACAAGGAATGGGAAACCATCAGCGGCAGTTGTACAAGAGTATTTGGTGGAGGCATATGAGACTCGAGTTGCAGAAACAGAGAAGAAAAAGCTAATGATTCCTATCCCCCTTGATGAAGAACTGAAATCTAAGATTTGTTCTCGTAAAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATACTTCATATTATTTTCAAGAGGATTCAAAGAACGGAGGCATGACTATTTCAGCTGGTTGAGAATCACCCAAGTTATATCCACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAATAACCCAAAAGGTCTGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCCGTCTTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGGCTAAGGAACGAGCAACAGATATGTACAGATTAAGTGCATACTTCGTGGCTAGAACTACAAGTGACATTCCACTAGACCTAGTATTACCAGTGCTTTTCCTCCTCGTTGTTTATTTCATGGCTGGCTTGAGACTGAGTGCAGGGCCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATTGTGGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAAGGCAACAACTTTGGCTTCAGTGACTGTGATGACTTTCATGCTGGCTGGAGGTTTCTTTGTGAAGAAAGTCCCCATATTCATATCTTGGATTCGGTACCTATCTTTCAACTACCACACGTACAAACTTTTGCTGAAGGTGCAATATGAACACATTACACCTAGCATAAATGGGATCAAAATTGACAATGGTTCCACAGAGGTTGCTGCTCTGATAGTAATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTCTGCGGTGGATGAAACTTCAAGCTTGA 2292 0.4359 MENANACGLGRTKSDQLVESVVAAMKSPAASSSESIGGGNLSRKSSRRMMTASPGGGKNTHIRKARSAQLKVELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADTKPFSDDDIRYHAVHNDTIPLKLQASCVAEDIEAGSHKPKFQTEPTLPIYLKFTDVTYKVVIKGMTTTEEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGARVNHTTIGGSITYNDQPYSKFLKSSTYMKYAFGRIGFVTQDDVLFPHLTVKETLTYAARLKLPNTLTKEQKEKRALDVIVELGLERCQETMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMDYFQCIGCTPLIAMNPAEFLLDLANGNVNDISVPSELEDRVHMGNADAETRNGKPSAAVVQEYLVEAYETRVAETEKKKLMIPIPLDEELKSKICSRKRQWGASWFEQYFILFSRGFKERRHDYFSWLRITQVISTAVILGLLWWQSDANNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLAKERATDMYRLSAYFVARTTSDIPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKKATTLASVTVMTFMLAGGFFVKKVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIKIDNGSTEVAALIVMVFGYRLLAYLSLRWMKLQA 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi474g00016 763 ProSitePatterns ABC transporters family signature. 315 329 IPR017871 GO:0005524|GO:0016887
Sebi474g00016 763 MobiDBLite consensus disorder prediction 28 66 - -
Sebi474g00016 763 Pfam ABC-2 type transporter 372 433 IPR043926 GO:0140359
Sebi474g00016 763 Pfam ABC transporter 183 343 IPR003439 GO:0005524
Sebi474g00016 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 408 IPR027417 -
Sebi474g00016 763 CDD ABCG_EPDR 157 397 - -
Sebi474g00016 763 MobiDBLite consensus disorder prediction 28 53 - -
Sebi474g00016 763 Gene3D - 159 409 IPR027417 -
Sebi474g00016 763 FunFam ABC transporter G family member 22 170 409 - -
Sebi474g00016 763 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 141 753 - -
Sebi474g00016 763 SMART AAA_5 192 392 IPR003593 GO:0016887
Sebi474g00016 763 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 160 415 IPR003439 GO:0005524
Sebi474g00016 763 Pfam ABC-2 type transporter 510 719 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi474g00016 Sebi-Chr474 184302 191459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi474g00016 182 401 Calmodulin-binding Proteins AT2G36910 29.646 4.07e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi474g00016 K05681 - gmx:100796008 1203.35