Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi474g00012 ATGGAAAGCAAGACTGAAACTCACATGACATCGGCTGTGGCCTTTGTTGAAGGGGGCATTCAAGAATCCTGTGATGATGCTTGCAGTATATGCCTTGAGGAGTTTTGTGAAAGTGATCCTTCAACGGTCACAACTTGTAGGCATGAGTTTCACCTGCAGTGCATTCTTGAATGGGGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTACCAGTCAGGAATTGTTTGAGGCGGTAGAGCAGGAGAGGAAGCTGAGGGTTACTCCATCAAGGAATGCTGCTATTTTTCGTCACCCTGCCCTTGGTGATTTTGATTTGCAGCACCTACGCATGAGTGTCAATGATGCTGATCTTGAAGAGCGAATAATCCAACATTTAGCTGCTGCTGCAGCAATGGGGAGAGCCAACCACCTTGTTCGGAGGGAAGTGCAGCGAACTCGGTCATCTGCTCATGGTCATCCACATTTCTTAGTATTCTCAACTCAGCCTTTTGCACCTTCATCAAGTCCTGATTCAGCTGCTGAAAGGGGAAATGAACCAGCTGCAATTCCGATAGGAAGTCCATCTACCCCAATAACATCTGATGGAGATGGACCATCACAGCAGATCTCACATATTCAAGCCCATAGCTCTTCATCTTCTGGATCTTCTGTCATGGCAACAAATGGCCAAAGAAATTACTCTAATGCTAGAGGCTCTACCGCTCAATCTTCACCAGTGAACCAAGATGGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGACTGAATGCAGTATCCATGAGATACAAAGAGTCAATTTCAAAAGGGGCAAGGGGATGGAGGGAGAGGCTGTTCTCTCGAAGTTCTTCCATGTCAGAAATTGATGCAGAAGCTAGGAGAGAGGTGAGTACTGGGATTGCTAGTGTGTCCCGATTGATGGAATCCCTCGGAACTAGAGAAAATAATAGCGCCGTGGGTGCTTCTTTGTCAAATCATTTGGAGGATGGTTCTATGGCAGAGGTGAGCAACCAGAGCAATGTTGAAGCTAGTGGAGAAAGCCCTTCACAACACAACAATTCTCCAGCTGCGTGTTCTGCTAGCTCACATTCAAGCTGA 1134 0.4691 MESKTETHMTSAVAFVEGGIQESCDDACSICLEEFCESDPSTVTTCRHEFHLQCILEWGQRSSQCPMCWQPISLKDPTSQELFEAVEQERKLRVTPSRNAAIFRHPALGDFDLQHLRMSVNDADLEERIIQHLAAAAAMGRANHLVRREVQRTRSSAHGHPHFLVFSTQPFAPSSSPDSAAERGNEPAAIPIGSPSTPITSDGDGPSQQISHIQAHSSSSSGSSVMATNGQRNYSNARGSTAQSSPVNQDGAGPSEFQSFSDSLRSRLNAVSMRYKESISKGARGWRERLFSRSSSMSEIDAEARREVSTGIASVSRLMESLGTRENNSAVGASLSNHLEDGSMAEVSNQSNVEASGESPSQHNNSPAACSASSHSS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi474g00012 377 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Sebi474g00012 377 Pfam Ring finger domain 27 68 IPR001841 -
Sebi474g00012 377 MobiDBLite consensus disorder prediction 151 260 - -
Sebi474g00012 377 SUPERFAMILY RING/U-box 20 76 - -
Sebi474g00012 377 MobiDBLite consensus disorder prediction 326 377 - -
Sebi474g00012 377 SMART ring_2 28 68 IPR001841 -
Sebi474g00012 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 77 IPR013083 -
Sebi474g00012 377 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 12 77 - -
Sebi474g00012 377 MobiDBLite consensus disorder prediction 194 260 - -
Sebi474g00012 377 FunFam E3 ubiquitin-protein ligase RHF2A 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi474g00012 Sebi-Chr474 146076 149198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi474g00012 25 68 C3H Transcription Factor Family AT5G15790 52.273 1.03e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi474g00012 K19043 - gmx:100819110 508.834