Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi474g00010 ATGGGAAACAATTGTGTTGGATCAATAGTCTCAAAAGATGGACTAATTCCTTCTGTTCTTCCAAGTTCATTTTGGTGGTCACAGCCAACTAGTGGAATAGTAATCACTGGTGCACCTTCACCTGTGAGTAAAAATCCCAACACAAATGTTCAACAAAATGCTCCAGAGATAGTGAAAATTGACAACAAGGAGATGAAGCCAGTTCAATCCAATAAACAGGACAAAGAGGCTAATAAGAAGCCTTCAGAGGAACAAATAAGGCAAGGGGAAATGGAGCAGGCTAGAGTAGCACCAAAGATGCACCATAAGAAGAGGCTAGCAGTAGTAACTGCTGGACTTCAAGCTGAGTCTGTTTTGCTGAGAAAGAGTGGTCATTTTAAGGAGTACTATAATTTAGGACCTGAACTTGGGAAAGGACAATATGGAACTACTTCCCTTTGCTTGGAGAAAGCTACTGGGAAAAAGTATGCCTGCAAGTCCATTCCAAAGGTGAAATTGGTGAGAAATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCATTTGGCAGGTAGTCCAAATGTGATCTCAATTAAAGGGGCTTATGAGGATGCTGTTGCAGTTCATGTTGTCATGGAATTATGTTCAGGGGGTGAGTTGTTTGATAGGATTGTGGAAAGGGGCCATTACACCGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTCATAGAGTCTTGCCATTCCCTTGGAGTAATGCATCGTGATCTTAAGCCTGAGAATTTTCTTTTTGTTGATGGGCATGAAGACTCAACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGTGACGTGGTAGGGAGTCCTTATTATATTGCACCTGAAGTTCTACGCAAGCGTTATGGACCAGAAGCTGATGTATGGAGTGCAGGTGTTATCATATACATTCTCTTATGTGGAATGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGAGGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCCAAATATCTCTGAAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTTAGAGATCCTAGAAAACGGTTAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGATGGAGTTGCTCCGGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTTAAGCAGTTTTCAGCAATGAGCAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTACTGGATTGAAAGAAATGTTTAAGATGATAGACACAGACAACAGTGGTCAAATTACTTTTGAAAAACTCAAGAATGGGCTGAAAATGTTTGGTGCTAATCTCAGTGAATCTGAAATTTTCGATTTAATGCAAGCTCTTCAACAAGCCTGTGAAGAATTTGGCATGGAGGATGTCCTCTTGGAGGAATTGATCCAAGAAGCTGATCAGAATCATGATGGCCGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGAAATGCAGATTTAGGTAGGAGTGGTCTAAAGGGTAACACTAGTTTTAGCTTTGGATTTAGGGAGGCTCTATCAGTATGCTAA 1641 0.4101 MGNNCVGSIVSKDGLIPSVLPSSFWWSQPTSGIVITGAPSPVSKNPNTNVQQNAPEIVKIDNKEMKPVQSNKQDKEANKKPSEEQIRQGEMEQARVAPKMHHKKRLAVVTAGLQAESVLLRKSGHFKEYYNLGPELGKGQYGTTSLCLEKATGKKYACKSIPKVKLVRNDDVEDVRREIQIMHHLAGSPNVISIKGAYEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVSVIESCHSLGVMHRDLKPENFLFVDGHEDSTLKAIDFGMSVFFKPGDIFSDVVGSPYYIAPEVLRKRYGPEADVWSAGVIIYILLCGMPPFWGESEQEIFEEVLHGDLDFSSDPWPNISESAKDLVRKMLVRDPRKRLTAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMSKLKKMALRVIAENLSEEEITGLKEMFKMIDTDNSGQITFEKLKNGLKMFGANLSESEIFDLMQALQQACEEFGMEDVLLEELIQEADQNHDGRIDYNEFVAMMQRGNADLGRSGLKGNTSFSFGFREALSVC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi474g00010 546 Gene3D - 480 542 - -
Sebi474g00010 546 CDD STKc_CAMK 130 387 - -
Sebi474g00010 546 ProSiteProfiles Protein kinase domain profile. 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi474g00010 546 ProSiteProfiles EF-hand calcium-binding domain profile. 488 523 IPR002048 GO:0005509
Sebi474g00010 546 Pfam EF-hand domain pair 436 518 IPR002048 GO:0005509
Sebi474g00010 546 SMART serkin_6 130 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi474g00010 546 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Sebi474g00010 546 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Sebi474g00010 546 SUPERFAMILY Protein kinase-like (PK-like) 128 389 IPR011009 -
Sebi474g00010 546 FunFam Calcium-dependent protein kinase 1 132 215 - -
Sebi474g00010 546 SUPERFAMILY EF-hand 416 520 IPR011992 -
Sebi474g00010 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 118 490 - -
Sebi474g00010 546 Gene3D - 395 479 - -
Sebi474g00010 546 Gene3D Phosphorylase Kinase; domain 1 133 215 - -
Sebi474g00010 546 Pfam Protein kinase domain 131 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi474g00010 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Sebi474g00010 546 SMART efh_1 492 520 IPR002048 GO:0005509
Sebi474g00010 546 SMART efh_1 435 463 IPR002048 GO:0005509
Sebi474g00010 546 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Sebi474g00010 546 Gene3D Transferase(Phosphotransferase) domain 1 216 393 - -
Sebi474g00010 546 CDD EFh 436 518 IPR002048 GO:0005509
Sebi474g00010 546 FunFam Calcium-dependent protein kinase SK5 216 400 - -
Sebi474g00010 546 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi474g00010 Sebi-Chr474 123092 126414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi474g00010 1 540 EF-hand Containing Proteins AT5G04870 59.230 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi474g00010 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi474g00010 K13412 - gmx:100793377 739.954