Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi473g00014 ATGGCTCTTGTGAATGGACCAATTGACATGGTTAGGAACATCTGTGGAGTGAAAGATTCATGGAGATTGAAAGTGAGGGTTGTCCGTCTCTGGAAAAGTTGCTCTAAAAACGATCCTAAGAAAGTTTTCTCTTTGGAGATGGTTTTGGTGGATGCCGAGGGTGCAAGGATACAGGCAAGTATCCGTAAACCAATGATCCGCAAATTTGCCGATGTTGTTGTTGAGGGAGAGGTTTACAAGATGATTCACTTTGCTGTTGTGAAGAACTTGGGTAACTTCCGTGCCACCAAGCATGAGTTCAAGCTAATTTTCAACAGTAGGACAACTGTCTTTCGTGCTGAAAGCCAACTCATTCCAGAGTTTGGTTTGTCATTGTCATCCTCTGAGGATATAAGGAAAACCAAGGGGGAATCTGAATATTTGTATGATGGGAAAACAACTCGATTGATTGTGCTTGAGCTCACAGATGATAAGGGTAAAATTAGGTGCACACTGTTCGGGGACTATGTAGACAAAGTGAATGAATTCCTATCATTGAGTGGTACACAGTTAACTGTTGTTGTTATTCAATTTGCAAGAGTTAACACTTACAAGGGTGAAGTTGGTTTGGTCAATGTGTTTAACACTTCACGGCTGTTGTGGAACCCACAAATAGTTGAGGCAATTGATTTTAGAAAAAGTGTTGCTTGCCATGAGGTGGACTCCGATATTTGCATTGGTTTTCTTGATGATGATATTCAGTCTTTGTCCATGAAAGATGAGTTTTTGAATTCATTCCCTCGGAAGAATCTTGAAGAGTTACAAACATGTGAAGAGGATGGATTCTTTGTTGTCCTTGCAACTGTTTTATCTATTATTGATGATCATTGGTGGTATTCAGCATGTAGCTGCAATAGATCTGTTACCACTGATGATGAGGGTCAAAATTATTGTACTAATTGTGCAACTTATGTATCTCAAGTCACTCCAAGGTACAAGCTCAAGTTGTTGGTCTGTGACTGCTTTGAAACTGCAACATTCATTCTCTTTGATAGTCATTGTCGTTACCTGCTTAATAAGTCATGCGAGGAGATGTTGTCAATATCAAAGGTTGAGAGTTCACCCACTTTTCCTGATGAGTTGAAACAAATTGTTGGAAAAGAAATATTGTTCAAGGTTCAAAAGAATGCAGATGTATCTTTTTTTTATGATGATGATGCCTATAAGGTGAAAAAAATATGTGATGATACCGAAATCATTGAGGAATTTAAGACTGATGGCTCCATTGTGACACCCAAAAAGGTTTAA 1287 0.3877 MALVNGPIDMVRNICGVKDSWRLKVRVVRLWKSCSKNDPKKVFSLEMVLVDAEGARIQASIRKPMIRKFADVVVEGEVYKMIHFAVVKNLGNFRATKHEFKLIFNSRTTVFRAESQLIPEFGLSLSSSEDIRKTKGESEYLYDGKTTRLIVLELTDDKGKIRCTLFGDYVDKVNEFLSLSGTQLTVVVIQFARVNTYKGEVGLVNVFNTSRLLWNPQIVEAIDFRKSVACHEVDSDICIGFLDDDIQSLSMKDEFLNSFPRKNLEELQTCEEDGFFVVLATVLSIIDDHWWYSACSCNRSVTTDDEGQNYCTNCATYVSQVTPRYKLKLLVCDCFETATFILFDSHCRYLLNKSCEEMLSISKVESSPTFPDELKQIVGKEILFKVQKNADVSFFYDDDAYKVKKICDDTEIIEEFKTDGSIVTPKKV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi473g00014 428 SUPERFAMILY Nucleic acid-binding proteins 142 229 IPR012340 -
Sebi473g00014 428 Gene3D - 125 234 IPR012340 -
Sebi473g00014 428 SUPERFAMILY Nucleic acid-binding proteins 262 403 IPR012340 -
Sebi473g00014 428 Gene3D - 249 413 IPR012340 -
Sebi473g00014 428 SUPERFAMILY Nucleic acid-binding proteins 12 114 IPR012340 -
Sebi473g00014 428 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Sebi473g00014 428 PANTHER OS03G0429900 PROTEIN 18 390 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi473g00014 428 Gene3D - 7 114 IPR012340 -
Sebi473g00014 428 CDD RPA1_DBD_B_like 139 228 - -
Sebi473g00014 428 CDD RPA1_DBD_C 271 386 IPR047192 -
Sebi473g00014 428 CDD RPA1_DBD_A_like 22 110 - -
Sebi473g00014 428 Pfam Replication factor-A C terminal domain 275 392 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi473g00014 Sebi-Chr473 625449 627780 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi473g00014 21 362 Core DNA Replication Machinery Family AT4G19130 22.715 6.71e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi473g00014 - - lja:Lj6g3v0884310.1 375.17