Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00068 ATGGGCCAGTGTTATGGTAAGACCAATCCCACTGAACATGAGCCAAACACAACCACCATAATTGGCGCCTCCGGCGACGCCACTGGCTACCCGACGCCCTCCTCCACCGGTGTCGGCAACGGGTTTCCGTCGTCGGTGAAGAACACGCCGGCACGGTCCTCCTCGCACGCCAGCCCCTGGCCGAGTCCCTATCCTCAGGGAGTAAACCCGAGCCCGTCGCCGGCGAGGGCTTCGACGCCGAGGGGGTTTTTCCGGCGTCCTTTTCCGCCTCCATCTCCGGCAAAGCATATAAGGGCGTCTTTGGCGAAGAGGCTTGGGCAGGCGAAGCCCAAGGAAGGCCCAATACCGGAGGAACGTGGTTCGGAACCAGAGCAGGCGCTGGATAAGAGCTTCGGGTATAGCAAGAACTTTGGAGCAAAGTATGAGGTGGGGAAGGAAGTGGGGCGAGGGCATTTTGGTCATACATGCTCTGCCAGGGCCAAGAAGGGTGAACTCAAAGACCAAACTGTTGCTGTTAAAATCATTTCCAAGGCCAAGATGACCACAACAATATCAATTGAAGATGTTCGTAGAGAAGTGAAGATTTTAAAAGCTCTGTCTGGCCATAGGCATCTCACCAAGTTTCACGATGCTTGCGAGGATGCCAATAATGTGTACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACCGAATTTTGTCAAGGGGAGGAAGGTATACAGAGGAGGATGCAAAAGTTATAGTTTTGCAGATTCTAAGCGTGGTTGCCTTTTGTCATCTTCAAGGTGTTGTGCATCGTGATCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCAGACCAGATGAACGGTTGAATGACATTGTTGGGAGTGCATATTATGTTGCACCTGAGGTCCTTCACAGGTCTTATAGTGTGGAAGCAGATATATGGAGTATTGGTGTTATTACCTACATCTTATTGTGTGGAAGTCGACCTTTTTGGGCACGAACAGAATCTGGAATTTTTCGTGCAGTGCTCAGAGGTGATCCTAAGTATGATGATTTACCTTGGCCATCAGTATCTCCAGAGGCCAAGGACTTTGTTAAAAGGCTCCTAAACAAGGACTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAACTCACCCTTGGTTGAGGGATGATAGCCGTCCTATGACTCCTATCCCTTTAGATATATTAATTTATAAATTGGTGAAGTCTTATCTTCATGCGACACCATTCAAACGTGCAGCAGCAAAGGCTCTCTCAAAAGCCTTGACAGAGGATCAGTTGGTGTATCTAAGAGCACAATTCAGATTGTTGGAACCAAATAGAGACGGGCATGTCACCCTTGACAATTTCAAAATGGCTCTTGTACGTCATGCAACTGATGCCATGAGAGAGTCAAGGGTTCTTGACATCATACACACGATGGAACCACTTGCCTATAGAAAGATGGATTTTGAAGAATTTTGTGCAGCTGCAACTAGCATATATCAATTGGAGGCACTTGATAGGTGGGAGGATATTGCCAGCACTGCTTTTGAGCATTTTGAGAGAGAGGGTAACCGTGTGATATCGATTGAAGAATTAGCAAGAGAGTTAAATCTTGGTCCTTCAGCTTATTCAATTCTCAAAGATTGGATTAGAAATGATGGAAAGCTTAATTTACTTGGATATACAAAATTTTTGCATGGCTTTATTCCCCGAAATTCAATCCCAAGACACCGTTAG 1788 0.4653 MGQCYGKTNPTEHEPNTTTIIGASGDATGYPTPSSTGVGNGFPSSVKNTPARSSSHASPWPSPYPQGVNPSPSPARASTPRGFFRRPFPPPSPAKHIRASLAKRLGQAKPKEGPIPEERGSEPEQALDKSFGYSKNFGAKYEVGKEVGRGHFGHTCSARAKKGELKDQTVAVKIISKAKMTTTISIEDVRREVKILKALSGHRHLTKFHDACEDANNVYIVMELCEGGELLDRILSRGGRYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERLNDIVGSAYYVAPEVLHRSYSVEADIWSIGVITYILLCGSRPFWARTESGIFRAVLRGDPKYDDLPWPSVSPEAKDFVKRLLNKDYRKRMTAAQALTHPWLRDDSRPMTPIPLDILIYKLVKSYLHATPFKRAAAKALSKALTEDQLVYLRAQFRLLEPNRDGHVTLDNFKMALVRHATDAMRESRVLDIIHTMEPLAYRKMDFEEFCAAATSIYQLEALDRWEDIASTAFEHFEREGNRVISIEELARELNLGPSAYSILKDWIRNDGKLNLLGYTKFLHGFIPRNSIPRHR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00068 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Sebi472g00068 595 FunFam CDPK-related kinase 1 134 229 - -
Sebi472g00068 595 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00068 595 PANTHER SERINE/THREONINE-PROTEIN KINASE 125 564 - -
Sebi472g00068 595 Gene3D - 424 583 - -
Sebi472g00068 595 Gene3D Transferase(Phosphotransferase) domain 1 231 416 - -
Sebi472g00068 595 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Sebi472g00068 595 FunFam CDPK-related kinase 3 133 305 - -
Sebi472g00068 595 CDD STKc_CAMK 140 402 - -
Sebi472g00068 595 FunFam Calcium-dependent protein kinase SK5 313 410 - -
Sebi472g00068 595 MobiDBLite consensus disorder prediction 110 125 - -
Sebi472g00068 595 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00068 595 SUPERFAMILY EF-hand 433 583 IPR011992 -
Sebi472g00068 595 FunFam CDPK-related kinase 1 442 514 - -
Sebi472g00068 595 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00068 595 SUPERFAMILY Protein kinase-like (PK-like) 136 431 IPR011009 -
Sebi472g00068 595 Gene3D Phosphorylase Kinase; domain 1 134 230 - -
Sebi472g00068 595 MobiDBLite consensus disorder prediction 1 62 - -
Sebi472g00068 595 MobiDBLite consensus disorder prediction 1 125 - -
Sebi472g00068 595 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00068 Sebi-Chr472 754381 761101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00068 62 589 EF-hand Containing Proteins AT3G50530 61.552 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi472g00068 Pkinase 3.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00068 K13412 - qsa:O6P43_027422 966.837