Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00053 ATGCCAAAGAGATCTGTGGCTCAAACCTGTAATGCTAGCCGGGACCTTGGCCAATCAATCCTTCAAGTTTGTATTTTAAATGAAGCTGCTACATATTACTCAAATCTGCATATTAGAGAGGGTGGTTCAGAAAATGGGCCAGGCAAGGAAGTGGAGTACACTATGGACCAGGAATTGGACTTGGGTCCTAGGATTCCCAATGTAGGGAGAATGTATTCCAGAACAAAGTCAGGGCTGTTAGGAGTTAGTGGTCTCTCAAATGGAGGTTGTTCACCAAAGTTTATCATCATTGATGATGGATGGCAAGAGATGGTCAATAAGTTTTGTGAAGAAGCACGTGTTTTGAGAATGGGTGAAGTGGCGGCGGGGGTGATGCAGAGGCACGAGGAGGAACAGAGCAACCACAATAACCGCAATGCCTCGGAGGAGGAGGTGGTGGTTAGATGGGAGAGGTTTCTGCCTCGGATGGTTCTGAGAGTCTTGCTTGTCGAAGCTGATGATTCTACTCGCCAGATTATTGCTGCCCTTCTCCGTAAATGCAGTTACAGAGTTGCTGCAGTGCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTGGAGTTGCCATCAATATCTGGATTTTCACTTCTTACTTTAATCATGGAGCATGACATTTGCAAAAATATTCCTGTCATAATGATGTCTTCTCGTGATTCAGTTAGCATGGTGTTCAAATGCATGTCAAAAGGTGCAGCCGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTAAGGAATTTGTGGCAGCATGTATGGAGAAGACATGCTATCAGCAGGCCTCCTCAAGATTTAACATTTCCACAGAATAAACTTAATGTTGCTGCAGAAAACAATGCTACGAGTAATAATTCTACTCGTTCTGTGGCTTCCACGCAGAAAAATAATGAATACAACGAGAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTGAGACTGAGAGTGCATACATGGAAAATATGCAGGATACGTCCCAGCTGAAGTGTACTTCAAATTTGAGCAATATTGACATGGTAAAGCACGAAAAGTCTACCAAATTTGAAAGGGAATCAGCTGAGCATAACGATGAAGCGGAAGATAAATCAATTATATTTGTATCTGAAGCTGCAATGTACAACAAAACCTTAACAGGTTTAAGGCTAGGTCAAGGCTATGATTGTAGTAGAACAGAAAACCAAGATGAAGTTGTAAGAGCAGAGTTAAGCAAAGCCCATCATCATATTCATGGATGCAGTGATGAACCAGTGAAACCTTCTACTGGGGCTATTGATTTGATTGCTACATTTGAGAATCTTCCAAAGAGCGCTGAAGAAAATTGTAGTTTCAACATTGGTAATACAGCCAAGTTTGGTTTTGATACACAATTGGAACTCTCTTTAAAAAGAGATTCTCCTGGCAGCTCATGTAAACCTGCAACTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCTTTTTCTCGGTATAGCAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAGCACAAGATTCCAATGAGCAACATAAATTATCTGAAGATACAAATACTTCTCATCAGTATGATTGCAAAAATCAAAATCAGGAGAATATTACCACTCTAGCTATTGGTCAGTCTGGTCAAGCTGAAGCAAAATTGCCAAACAGCCAGCTTGGATTCTTTCCTGGTATTGGGGTTACTTCTGATAATAAGTCTACGGGTAATCGACACGGTAATCTTTTCCCTTCTATGCTTTCCACACAATCAGGTAAGCATCCCATATGGACCCCAAAACCAGTGTGCCACAAAGAGAGTTCCCCATTTCCTACAAGTACTTCTTCCCAGTCCAATACTGAAAGTCACAACTCAGAACATCATCACTGGTCAGATGATGCCACCTACACTTCTGATCAACATGTAGATGATCAAAGAAATTTGGATTGCGGGATGCATGACTCTCCTGCTACTGGTCAAAATCCTGGTAGTAGTTTTTACCATGATGCAGCAAATCATAATAGCAGTGGTGTATATGGAAGCGTAGGCAGCGGAAGTGATGGAAATGCTCCTTCAGCTGTTGAAGCCCAGAACAACCTTGACAGTTTTATGGATAGTGGGCACCACACTTGTGATGGATTCAAAGGGACAGATTCTCATGGCACCAGCCAAAGACAAGCAGCTCTAACAAAGTTTCGACTTAAACGAAAAGACAGATGCTATGAGAAAAAGGTCCGATATGAAAGCCGAAAAAGACTGGCAGAGCAGCGCCCTCGGGTGAAAGGACAATTTGTTCGCCAAGTGCACAATGAACAAGCAGTAGCAGATGCCGGTGGTGGTTTCTGA 2406 0.4227 MPKRSVAQTCNASRDLGQSILQVCILNEAATYYSNLHIREGGSENGPGKEVEYTMDQELDLGPRIPNVGRMYSRTKSGLLGVSGLSNGGCSPKFIIIDDGWQEMVNKFCEEARVLRMGEVAAGVMQRHEEEQSNHNNRNASEEEVVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYRVAAVRDGLKAWETLKNKASDIDLILTEVELPSISGFSLLTLIMEHDICKNIPVIMMSSRDSVSMVFKCMSKGAADFLIKPVRRNELRNLWQHVWRRHAISRPPQDLTFPQNKLNVAAENNATSNNSTRSVASTQKNNEYNEKTSEAQSTCTSPFLEAETESAYMENMQDTSQLKCTSNLSNIDMVKHEKSTKFERESAEHNDEAEDKSIIFVSEAAMYNKTLTGLRLGQGYDCSRTENQDEVVRAELSKAHHHIHGCSDEPVKPSTGAIDLIATFENLPKSAEENCSFNIGNTAKFGFDTQLELSLKRDSPGSSCKPATEERQILNHSNASAFSRYSSSKLLQPLFPAQDSNEQHKLSEDTNTSHQYDCKNQNQENITTLAIGQSGQAEAKLPNSQLGFFPGIGVTSDNKSTGNRHGNLFPSMLSTQSGKHPIWTPKPVCHKESSPFPTSTSSQSNTESHNSEHHHWSDDATYTSDQHVDDQRNLDCGMHDSPATGQNPGSSFYHDAANHNSSGVYGSVGSGSDGNAPSAVEAQNNLDSFMDSGHHTCDGFKGTDSHGTSQRQAALTKFRLKRKDRCYEKKVRYESRKRLAEQRPRVKGQFVRQVHNEQAVADAGGGF 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00053 801 Coils Coil 125 145 - -
Sebi472g00053 801 MobiDBLite consensus disorder prediction 300 334 - -
Sebi472g00053 801 MobiDBLite consensus disorder prediction 642 670 - -
Sebi472g00053 801 SUPERFAMILY CheY-like 154 288 IPR011006 -
Sebi472g00053 801 MobiDBLite consensus disorder prediction 627 641 - -
Sebi472g00053 801 Gene3D - 156 437 - -
Sebi472g00053 801 Pfam Response regulator receiver domain 160 271 IPR001789 GO:0000160
Sebi472g00053 801 MobiDBLite consensus disorder prediction 591 615 - -
Sebi472g00053 801 ProSiteProfiles Response regulatory domain profile. 159 277 IPR001789 GO:0000160
Sebi472g00053 801 MobiDBLite consensus disorder prediction 677 692 - -
Sebi472g00053 801 CDD psREC_PRR 160 263 - -
Sebi472g00053 801 Pfam CCT motif 745 787 IPR010402 GO:0005515
Sebi472g00053 801 SMART REC_2 158 273 IPR001789 GO:0000160
Sebi472g00053 801 Pfam Raffinose synthase or seed imbibition protein Sip1 81 136 IPR008811 -
Sebi472g00053 801 ProSiteProfiles CCT domain profile. 745 787 IPR010402 GO:0005515
Sebi472g00053 801 PANTHER TWO-COMPONENT RESPONSE REGULATOR 158 504 IPR045279 GO:0009736
Sebi472g00053 801 MobiDBLite consensus disorder prediction 591 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00053 Sebi-Chr472 596104 606564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00053 744 793 Response Regulator Gene Family AT5G24470 86.000 3.35e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Sebi472g00053 Response_reg 5.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00053 K12130 - gmx:100779346 901.738