Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00049 ATGGCAAGCCTTCCTGATTCCGATTCGAAGAAAAAGGTGGTCGTGGAGTGTGAGTATGACCACGAGAAACCAGAATCCGAATTGGAAGATGAAGAAAGCTTCTCGTATGCTGTGCAACTTGGCAATTCTATTGTGCTTCCCATGGCACTCCAATCCGCAACGGAGTTGGGTGTATTTGACGTCTTGCAGAAAGCAGGTAGAAGTGCTAAACTCTCTTCCAAGGATATTGCATCTAAGCTTTCCTGCAACAATCCAGAAGCAGCCGCAATGTTAGATCGCATCCTCGCCCTTCTTGCCTCCCACTCTGTGCTTAACTGCTCTGTCCTTCCTGATGAACAAAACCTTGGATCCTTTCACAGACTCTACAGCATCACCCCTGTCGCCAGATTCTTCGCTCGCGATTCCGATGGTGTTTCATTAGGGCCTTTGATGGCCTTGCATCAAGATAAAATCTTCCTAGCTAGCTGGTCCCAGCTGAAAGACGCAATACGGGAAGGGGGTATTCCATTCAACAGGGTTCATGGAACACATGCCTTTGAGTATCCAAGCTTGGACTCGAGGTTCAATCAAGTTTTCAATTCAGCAATGATCAATCACACTACTTTAGTTATGAAGAAGGTTCTTGAATGCTACAAAGGTTTTGAGGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCACCATTAGCATGATCACTTCCAAATACCCTCATATCCAGGGTATCAATTTTGACTTGCCTCATGTTATACAACATGCCCCTTCCTATCCTGGAGTGGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGCAGATGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGCACTGCTTGAAACTTTTGAAGAATTGCTATAATGCTATTCCAGAGGATGGAAAGGTGATTGTTTTGGAGGCAGTGCTTGCTATTATACCTGAGAATAATGCTACTTGGAAGTTTGTGTCCCAATCGGATGTGCTGATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGAATTGGCAACTGCAGCTGGATTTAGTGGCATTAGATATGAATGCTATGTCCGTACCTTTTGGATTATGGAATTCTTCAAGTAG 1140 0.4439 MASLPDSDSKKKVVVECEYDHEKPESELEDEESFSYAVQLGNSIVLPMALQSATELGVFDVLQKAGRSAKLSSKDIASKLSCNNPEAAAMLDRILALLASHSVLNCSVLPDEQNLGSFHRLYSITPVARFFARDSDGVSLGPLMALHQDKIFLASWSQLKDAIREGGIPFNRVHGTHAFEYPSLDSRFNQVFNSAMINHTTLVMKKVLECYKGFEDIKRLVDVGGGLGITISMITSKYPHIQGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKADAIFMKWILHDWSDEHCLKLLKNCYNAIPEDGKVIVLEAVLAIIPENNATWKFVSQSDVLMMTQNPGGKERTEQEFMELATAAGFSGIRYECYVRTFWIMEFFK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00049 379 PIRSF O-mtase 11 379 IPR016461 GO:0008168
Sebi472g00049 379 PANTHER O-METHYLTRANSFERASE 40 364 IPR016461 GO:0008168
Sebi472g00049 379 FunFam Caffeic acid 3-O-methyltransferase 17 131 - -
Sebi472g00049 379 Pfam Dimerisation domain 48 99 IPR012967 GO:0046983
Sebi472g00049 379 Gene3D Vaccinia Virus protein VP39 132 379 IPR029063 -
Sebi472g00049 379 FunFam Caffeic acid O-methyltransferase 132 379 - -
Sebi472g00049 379 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 377 IPR029063 -
Sebi472g00049 379 Gene3D - 15 131 IPR036388 -
Sebi472g00049 379 Pfam O-methyltransferase domain 156 361 IPR001077 GO:0008171
Sebi472g00049 379 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 379 IPR016461 GO:0008168
Sebi472g00049 379 SUPERFAMILY "Winged helix" DNA-binding domain 29 134 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00049 Sebi-Chr472 555762 557764 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00049 27 379 Monolignol Biosynthesis Gene Families AT5G54160 54.108 4.72e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00049 K13066 - gmx:100803633 607.446