Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00043 ATGGAGGATGGGAATAGGGTTCCGGGGGAGGGTGGTTCGTCCCCCTCTTACTGGCTGGATGCCTGTGAGGACATCTCCTGCGATTTTATCGATTTTGATGTGTCATCCATCGTCTCAGAGCAGCCTGATAACACTTCCAATCAGGACTTCTTCGGTGGGATTGATCGAATCCTGGACAGCATCAAGAACGGTGGTGGCCTCCCTCTTGAGGCTGAACCAAATTCCAATCCTAATGGCACTGCAGCAGCAGGAGGAGAACCATTGCCACCTAATGATGCACTTTCCAAGGTGCAGCAACAGTCTTTCACTCCACCTGCTTGCTTCAATGGCACTCCCGAAGACGCTTTTCGGAAGAATGGATTGGTTGGGGAGAAACATGGTCGTACTGCAACTGCTGATGCTTTGGAGCATTCAGGAGCCCAGAGCAACGGCTCCTGTAACAAGCTGTCAAATGGGAATCAAGGGGGTGTTTTGGTTAGTCATTCTCAGGAAAATGGAGGTATGGCTCTGAATAGAGGTCATGATGTTGATGGTGAAGAAAGATGTGGCAAAAGGGCTAGGCTTGGCAGCTACAAGAATGAGAGGCCTTATTATGGCAGAGTGAATTATCAAGCCAAGGAGAGAGAGAGGTGTTTCAGTAATAGGAAGAGGCCAAGGGATAGGGATGAGATTGATAGGAGGGATAAAGATGGTGTGAGGAAAAGAGAACATTATGGTACTTGTGGCAGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAACAGAGGGGTTACTGGGAGAGGGATAAGTTAGGTTCCAATGGAATGGTCTTTCGCTTGGGCACTTGGGAAGCTGAACGTAATCGAGAAGAGAAAATAGCAAATGAGACAAAACAGGAAAGCAATGGAAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAAAGGGTTCCTGAGGAAAAAGCAAGACAGTATCAGCTGGATGTTCTTGAGCAGGCAAAGAGTAAAAATACCATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCCTGATTGCTGTTCTTCTCATGAAAAGCATACATGAGAATTTACAAAAACAAAATAAGAAAATGCTTGCAGTATTTTTGGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGGGAGCGAACTGGATATCAAGTGGGACACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGGAGGTGGCAGCGTGAATTTGACACTAAACATGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCACAGCATAATAAAAATGGAAGCAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAAAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAAAAGAGACCATCCGTGTTTGGAATGACTGCTTCACCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATCCGTAATCTCGAAAGTAAGCTAGATTCAGTAGTTTGTACCATTAAAGATCGCAAAGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCGGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAGTCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTAGGACAATGGTGTGCATATAAGGTTGCACAGTCTTTTCTAGCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTCTCTCTTCTGAAATGTCAGCTGTCAGAGGGTGCAGTTTCTGACAAAAATGGGGGAGTTAATGACTCAGAGTATGGTGCAGCTCACAGTGGGTCTGAACATGAAGAGATCGAAGAAGGAGAGCTTCCTGACAGTCATGTTGTCTCTGGCGGGGAGCATGTGGATGTCATAATAGGAGCTGCTGTAGCTGATGGCAAGGTGACCCCCAAGGTGCAAGCACTAATCAAAATACTTCTCAAGTATCAGCACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTGGTTCTACCTAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCTAAGTTTCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGTCAATGCAATGTTGTTATTCGCTTTGACCTTGCGAAGACCGTTCTTGCATACATTCAGTCTAGGGGCCGTGCTAGAAAACCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAACGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTCGTGAGCTTAAATTCTGCTGTAGGTCTTATACACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCATGAAAAACCTGGAGGTCCCACTGAATATTCTTGCAAGCTTCAACTACCGTGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTTACTGACATGCTGTTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCTCTTCCGGGGACTGCGAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCGACAACTCCAAATTGCTTCATCTTTTTATGTATGCCGTGAAGTGTGAAAATGTAGGCCATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGTCATCTCTTATCTTTAGAGGGTCGATAGATATCACTGAGAGTCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATCGTCTTGGATGTGGATGTTGAACCGTCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTAGAGCTGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGGTTTTGGGCAAAAATCACATCCAACCTATGGAATAAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATGCAAACACAAAATCATATCAATATGACTACCAAAGGAAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTGGGGAAAATTGTAACTGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGGCTTTATCAACAATGTCCCATGGAAAGTGACAATAGCTGGTATGGAGTTGATTTGATGTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACACTGAAGCACATGAAGGTGAATCTGAAGAGTCTCATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGTTATGCTTAGTACACCCACTGCCTGGATCACTTGTTCGTGGTGCTCAGAGGTTGCCTTCAATAATGAGGAGAGTTGAAAGTATGCTACTTGCAATTCAGCTTAAGAATACAATAAGTTATCCTGTCCAGGCTTTAAAGATCTTGGAAGCCTTGACTGCAGCCTCTTGCCAGGAGACATTCTGCTATGAGAGGGCAGAGCTTCTTGGAGATGCTTACCTAAAATGGGTTGTTAGTCGATTTCTTTTTCTAAAATACCCCCAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTACCTGTCTTCGATGAGGACACGAAGGATGGGGAGTCATCTTTATTTGACCAGGAGCAACCCATTTCTAAGACTGAGATGATGGACAACACTAATGGATTTGAGGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTGTCAAGCAAGACACTTGCTGATGTTGTGGAAGCACTGATTGGGGTGTATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCAAATAGAATTTGATCCTGATGAGATGGAGTGTACAAGAAAGCCCTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATATGAAGTTTAAAGACAGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCTGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAGGCACCTGTTTTTCACTTACACTAATCTGCCACCAGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCAGTTAAACACAATCTTCATGTACATCTCCGACATGGGTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGATTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGTGCCGTTTTTCTTGACAGTGGGAGGGATACTGCTGTTGTTTGGAAGGTCTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCAGAAGGCTTAGAGTATAGAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTACAAGTAGGGGCTGCCCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGGAAAGACTCAGGAGAAGAATGATGAAAACGGCAAAAAGAATGGAAACCAGACATTTACTAGACAAACATTAAATGATATCTGTTTGCGAAGGAATTGGCCAATGCCATTCTACCGGTGCGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGTGTCAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCGGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCATAG 5910 0.4401 MEDGNRVPGEGGSSPSYWLDACEDISCDFIDFDVSSIVSEQPDNTSNQDFFGGIDRILDSIKNGGGLPLEAEPNSNPNGTAAAGGEPLPPNDALSKVQQQSFTPPACFNGTPEDAFRKNGLVGEKHGRTATADALEHSGAQSNGSCNKLSNGNQGGVLVSHSQENGGMALNRGHDVDGEERCGKRARLGSYKNERPYYGRVNYQAKERERCFSNRKRPRDRDEIDRRDKDGVRKREHYGTCGRRDVRDRDWRDREQRGYWERDKLGSNGMVFRLGTWEAERNREEKIANETKQESNGKLDKKSEEAKERVPEEKARQYQLDVLEQAKSKNTIAFLETGAGKTLIAVLLMKSIHENLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNGGVNDSEYGAAHSGSEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACDNSKLLHLFMYAVKCENVGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKSSLIFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVETIIRADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMGFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQNHINMTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGLYQQCPMESDNSWYGVDLMYKQQPLIRGRGVSYCKNLLSPRFEHTEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNTISYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQEQPISKTEMMDNTNGFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDEMECTRKPFNVPESILRSVDFDALEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAVFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00043 1969 CDD RIBOc 1648 1803 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 665 691 - -
Sebi472g00043 1969 FunFam Endoribonuclease dicer-like protein 310 550 - -
Sebi472g00043 1969 ProSiteProfiles Ribonuclease III family domain profile. 1432 1591 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 676 691 - -
Sebi472g00043 1969 SUPERFAMILY RNase III domain-like 1405 1609 IPR036389 GO:0004525|GO:0006396
Sebi472g00043 1969 Pfam Ribonuclease III domain 1446 1591 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 Pfam Ribonuclease III domain 1667 1780 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 Pfam PAZ domain 1274 1409 IPR003100 GO:0005515
Sebi472g00043 1969 Gene3D paz domain 1256 1395 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 999 1022 - -
Sebi472g00043 1969 FunFam Endoribonuclease dicer-like 1 1627 1801 - -
Sebi472g00043 1969 Gene3D - 309 553 IPR027417 -
Sebi472g00043 1969 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1806 1869 IPR014720 -
Sebi472g00043 1969 FunFam Endoribonuclease dicer-like 1 905 1006 - -
Sebi472g00043 1969 SMART PAZ_2_a_3 1253 1413 IPR003100 GO:0005515
Sebi472g00043 1969 Pfam Helicase conserved C-terminal domain 718 835 IPR001650 -
Sebi472g00043 1969 SMART ultradead3 311 514 IPR014001 -
Sebi472g00043 1969 CDD DEXHc_dicer 314 513 - -
Sebi472g00043 1969 SUPERFAMILY dsRNA-binding domain-like 1762 1888 - -
Sebi472g00043 1969 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 882 IPR001650 -
Sebi472g00043 1969 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1891 1964 - -
Sebi472g00043 1969 SMART helicmild6 751 837 IPR001650 -
Sebi472g00043 1969 ProSiteProfiles Ribonuclease III family domain profile. 1632 1780 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 PANTHER DICER-RELATED 329 1871 - -
Sebi472g00043 1969 Gene3D - 1897 1967 - -
Sebi472g00043 1969 Gene3D - 1804 1882 - -
Sebi472g00043 1969 Pfam Type III restriction enzyme, res subunit 313 481 IPR006935 GO:0003677|GO:0005524|GO:0016787
Sebi472g00043 1969 Coils Coil 274 294 - -
Sebi472g00043 1969 CDD RIBOc 1430 1609 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 137 156 - -
Sebi472g00043 1969 Pfam Dicer dimerisation domain 910 998 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 62 115 - -
Sebi472g00043 1969 FunFam endoribonuclease Dicer homolog 1 1897 1966 - -
Sebi472g00043 1969 SMART riboneu5 1647 1803 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 SMART riboneu5 1428 1611 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 Gene3D Dicer dimerisation domain 905 1006 IPR038248 -
Sebi472g00043 1969 SMART DRBM_3 1807 1868 IPR014720 -
Sebi472g00043 1969 SMART DRBM_3 1892 1965 IPR014720 -
Sebi472g00043 1969 ProSitePatterns Ribonuclease III family signature. 1667 1675 IPR000999 GO:0004525|GO:0006396
Sebi472g00043 1969 SUPERFAMILY RNase III domain-like 1631 1801 IPR036389 GO:0004525|GO:0006396
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 1870 1884 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 284 311 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 93 107 - -
Sebi472g00043 1969 CDD DSRM_DCL_plant 1897 1958 - -
Sebi472g00043 1969 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1891 1966 IPR014720 -
Sebi472g00043 1969 Gene3D Ribonuclease III domain 1413 1605 IPR036389 GO:0004525|GO:0006396
Sebi472g00043 1969 Gene3D Ribonuclease III domain 1627 1801 IPR036389 GO:0004525|GO:0006396
Sebi472g00043 1969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 849 IPR027417 -
Sebi472g00043 1969 ProSiteProfiles PAZ domain profile. 1253 1389 IPR003100 GO:0005515
Sebi472g00043 1969 FunFam Endoribonuclease dicer-like protein 1411 1603 - -
Sebi472g00043 1969 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 499 IPR014001 -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 1870 1890 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 209 238 - -
Sebi472g00043 1969 MobiDBLite consensus disorder prediction 996 1022 - -
Sebi472g00043 1969 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 910 1005 IPR005034 GO:0016891
Sebi472g00043 1969 Gene3D - 708 874 IPR027417 -
Sebi472g00043 1969 CDD SF2_C_dicer 715 845 - -
Sebi472g00043 1969 FunFam Endoribonuclease dicer-like 1 709 871 - -
Sebi472g00043 1969 SUPERFAMILY dsRNA-binding domain-like 1895 1965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00043 Sebi-Chr472 495764 507569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00043 734 877 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.94e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00043 K11592 - gmx:100811631 3437.12