Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00042 ATGGGGGAAGCAGTGCCTGTGGGATATAGATTTCATCCCACTGATGAAGAGCTTGTGGGTCACTACCTCAAATATAAACTTCTGGGCGATGATTCCAGGGTGTGCAATACCATTGCTGAGTACACAAACAGTAGCAGGTCTAACAGGACAACCAAAGCTGGCTACTGGAAGGCCACTGGTAAAGACCGTAACATCAAGACACGTGGCACCAACAATGTCATTGGCACCAAGAAGACTCTGGTTTTCTACAGGGGCCGTGTTCCTCATGGTGTCAAGACCAATTGGGTTATTCACGAATATCATGCAATTACATTTCCTGTTGATAAGAGAACTTTTGTCTTGTGTCGCTTGATGGACAAAGCTGAGAAAAAAACAGAAGGCAGAACTGATGGATTGATAAATGAAGGGGAGCCTATTGCTGCTGATCATGAAAACCCAGCAATAGCTGATACAATTCCAGATGTATATACACTGCCAGAAATGACTCTGGAATCAATCTTTCCAACACGACCTCAGGCAGACGAATATGACTTCCCCTCACTACAGTACTCTCCAATTTTCACTGATCAGGAACTATTCCAGGATTCCACATTTACCAACATCTGTTTTGGGAATGAAAACAACATTACACAGATTCCATTTGATACAACTGAAGACGAAGACAATGTTGACTTATTCTTGAATGCAATTTTACTTGATGAGGATGTTGTCAATACTGAAGAAAGAAGGGATGCTTTTGTAAATGATTCAACTTTCTCACAGTCATTAACTCAGGTGTATTATGAAAGCAGTGAAACAGACGTTGAACTAGCCTCTGCACATGCACAGTGTGGCAATATTTTCAGCACTACACCTGCATGTAAACATGCCGTTTCAAGCAGATTCCAGGTTATGAGAATGGTTGATACACCACAAGATGCTGTTTATGCTGGCCCGCTTTCTTTGTCTTCTAAAATTGAAGTAAAGCAAGAGAAAAAGGAAAGTATCTTTGGTGATAATTTCAGCGGAATGGACATTTCTGGTGACTCAGCGGCAAATAAACCTTTGTGTATGTCTGTTATAGAGAATATTAGCTCTCCTTCACCTCCAACAACAAGCTTTTCTTCATCTTCAAGAAGAAGCAAAACTAAATATCATCCAAGATCAGACAACTCTGTGGCACGCAGAACTGCTCCAAAATCTCAAACACAGAGAAAGGTTTCAAGCAAAGCAACATCCCAAAATGAGGTGCAGAAGGAAACACAAATGCTAGAGTCAAACAAAGATCAGAGAAAAGCTCAGGATGCCAAATCAAGAACGAAATTGGAAACTACAAGCAATCAATCTTCCAGTGTCATTGGAAAAGGTGACCCTGAAGATCTCGTTCACGAAGACTCACTTCCCAAGATTTCTCGCCTGGAAAAAAGATATATATAA 1416 0.4096 MGEAVPVGYRFHPTDEELVGHYLKYKLLGDDSRVCNTIAEYTNSSRSNRTTKAGYWKATGKDRNIKTRGTNNVIGTKKTLVFYRGRVPHGVKTNWVIHEYHAITFPVDKRTFVLCRLMDKAEKKTEGRTDGLINEGEPIAADHENPAIADTIPDVYTLPEMTLESIFPTRPQADEYDFPSLQYSPIFTDQELFQDSTFTNICFGNENNITQIPFDTTEDEDNVDLFLNAILLDEDVVNTEERRDAFVNDSTFSQSLTQVYYESSETDVELASAHAQCGNIFSTTPACKHAVSSRFQVMRMVDTPQDAVYAGPLSLSSKIEVKQEKKESIFGDNFSGMDISGDSAANKPLCMSVIENISSPSPPTTSFSSSSRRSKTKYHPRSDNSVARRTAPKSQTQRKVSSKATSQNEVQKETQMLESNKDQRKAQDAKSRTKLETTSNQSSSVIGKGDPEDLVHEDSLPKISRLEKRYI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00042 471 MobiDBLite consensus disorder prediction 355 471 - -
Sebi472g00042 471 Gene3D NAC domain 34 125 IPR036093 GO:0003677|GO:0006355
Sebi472g00042 471 MobiDBLite consensus disorder prediction 433 447 - -
Sebi472g00042 471 ProSiteProfiles NAC domain profile. 1 120 IPR003441 GO:0003677|GO:0006355
Sebi472g00042 471 Pfam No apical meristem (NAM) protein 39 101 IPR003441 GO:0003677|GO:0006355
Sebi472g00042 471 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 30 - -
Sebi472g00042 471 MobiDBLite consensus disorder prediction 450 471 - -
Sebi472g00042 471 MobiDBLite consensus disorder prediction 387 414 - -
Sebi472g00042 471 SUPERFAMILY NAC domain 4 118 IPR036093 GO:0003677|GO:0006355
Sebi472g00042 471 MobiDBLite consensus disorder prediction 415 432 - -
Sebi472g00042 471 MobiDBLite consensus disorder prediction 355 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00042 Sebi-Chr472 430811 434877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00042 3 127 NAC Transcription Factor Family AT4G35580 41.975 1.81e-32 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi472g00042 NAM 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00042 - - pcin:129287580 339.347