Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00036 ATGACACAGGGAACTCCCAGTCACAGTTGCAGACAAAGACCCTCTTCCTCTTCCATGTTCATAATATTGTTAGTCCTGTCTTGGTTCCTGGTTCTTGTTGAAGCCTCCTCATGTAACCAATTGGATAGAGACTCGCTCTTGGCCTTCTCCATGAGCATATCCCCTCCTCTCAATTGGTCTTTTTCTGTTGATTGCTGCCTTTGGGAAGGTATTCTTTGTGAAGAGGACCAACACAATGTCAATGGGGATCTCAGAGTCACTCGTCTATTGCTACCATCCAGAGGTCTCACTGGCTTTATCTTCCCATCTCTTACAAACCTCACTGCTCTCTCTCACCTTAATCTCTCCCATAATCGGTTATCTGGTAATCTCCCAAACCAATTTTTCTCACTTCTTAACCACTTGCAAATTCTTGATTTAAGCAACAATCGTCTCTCTGGTGAATTGCCACTCTTTCTTGTTAATAACAGTAACAGTGCTAGGACTAGTTTCATCCAGGAGTTTGATTTGTCTAGTAATTTATTCAACGGAACACTCCCAGATTCTCTCCTTCACCACCTGGCAGCTGCAGCCACAGGGGGGAGTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACCGGTCAAATTCCCACTTCTCTTCTCTGCAGTAATGACAATAACTCATCCTCTATCAGATTCTTGGATTATTCCTTCAACCATTTCAGTGGCATGGTTCTTCCTGGACTAGGAGCATGTTCCAAGCTGGAGAAATTTCGAGCAGGTTTCAACTTACTATCCGGGCCTCTTCCCAGTGATATTCTTTATGCTGTTGCACTCACAGAACTCTCCTTGCCCCTCAATGAACTCAGTGGAACCATTGGCGATGCCATTGTTAGTCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACAGGGCCTATTCCCATGGATATTGGTAAGCTCTCCAAATTGGAACGGCTAGTCCTTCGCGCCAACAATCTGACTGGTACTCTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTCATGTTGGATTTAAGGATCAACTCCTTGAAGGGAAATCTCTCAGCATTCAATTTCTCTGGACTCCTCAGGCTCACTACACTTGACCTTGGCAACAATAACTTCACAGGTATTTTACCACCAACCCTTTATGCATGCAAGTCACTTAAGGCAGTAAGGCTAGCATCTAATCAGCTTGAAGGACAGATCTCACCTGACATACTTGGACTTCATTCTCTGGCTTTCCTATCAGTCTCTACCAACAAATTGACTAATGTCACTGGGGCTCTGAGGATACTCATGCGGCTCAAGAACCTTAGCCAAATCCCTGGTTGGCTTGTTAATCTGAAGAAGCTTGAGGTCTTGGATCTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTAGGCACACTTCCTCAGCTTTTCTACATAGACTTATCTTTTAACCTCCTTACAGGAAAATTTCCTATGGAGCTCACAAGGCTTACAGCACTAACATCTCAACAGGCATATGATGAAGTGGAAAGGACTTACCTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCCCAGATGCAATATAACCAGCTTTCGAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAATGACAGTATCCCCATAGAGATTGGCCTGCTGAAAGTCCTTCATCAGCTGGACCTTAGTTGTAACCAATTCTCTGGCAATATCCCAGTTCAAATTTCTAACTTGACTAACTTAGAGAAACTATACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGTTTCACTCACTAATTTGCATTTTTTATCTGTTTTCAATGTGGCACACAATGATCTTCAGGGACAGATACCAACCGGTGGTCAATTTGATACTTTCACTGCCTCCAGCTTTGAAGGAAACCCCAAGTTGTGTGGTTCAGTTGTTCAGCGATCTTGTCTTCCTCAAAATGCTAGGACTGCAGGTGGTCACAGTTCAAGGAAAAAACTAATAATTGGATTTGTCATTGCAGCATGTTTTGGCACAGTTTCCTTCATTTCAGTGTTGATAGTGTGGATACTGTCCAAGAGGAGGATCAGTCCAGGAGGAGACTCTGACGAGATTGAATCAGAAACAATTTTTGCCAGCTCTGACGGAGGGCTACATCTTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCCTAATAAAACAAATGAAATCAAGGATCTTACCATAGTTGAAATATTAAAAGCCACTGAATATTTCAGTCATGAAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACTTTACCAGATGGAACTACTCTAGCCATCAAGAAACTTTCAGGAGATATGGGTCTCATGGAAAGGGAATTTAAAGCAGAGGTAGAGACTTTGTCTACAGCACAACATGAGAATCTGGTTGCATTGCAAGGCTATTGTGTTCATGAGGGCTTTAGGCTTCTCATATATAGTTACATGGAAAATGGAAGTCTGGATTACTGGTTACATGAAAAGGATGATGGTCCATCTCAAATTGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAGATATGTGAACCACACATAGTGCACCGTGATATAAAGTCAAGCAATATACTCCTTGATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGGCCCGATTGATTCTTCCTTATCAAACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCGGAATATGGGCAGGCATGGGTGGCAACTATGAGAGGAGATGTCTACAGCTTTGGGGTTGTCATGCTTGAGCTGCTCACTGGGAGGAGGCCTGTTGATGTGTCCAAGCCAAAAATGTCAGGAGAGTTGGTTGCCTGGGTTCAACAAATGAGGAGTGAAGGGAAACAAGATCAAGTCTTTGACCCTCTCTTGAGAGGGAAGGGCTTTGAAGAAGGGATGCTGCAGGTTCTTGATGTGGCCTGCATGTGTGTCAACCTGAATCCTCTTAAGAGACCAACCATCAGAGAAGTTGTTGAATGGCTAAAGAATGTAGGATCATCCAACTAA 3120 0.4298 MTQGTPSHSCRQRPSSSSMFIILLVLSWFLVLVEASSCNQLDRDSLLAFSMSISPPLNWSFSVDCCLWEGILCEEDQHNVNGDLRVTRLLLPSRGLTGFIFPSLTNLTALSHLNLSHNRLSGNLPNQFFSLLNHLQILDLSNNRLSGELPLFLVNNSNSARTSFIQEFDLSSNLFNGTLPDSLLHHLAAAATGGSLTSFNVSNNSFTGQIPTSLLCSNDNNSSSIRFLDYSFNHFSGMVLPGLGACSKLEKFRAGFNLLSGPLPSDILYAVALTELSLPLNELSGTIGDAIVSLTNLTVLELYSNNFTGPIPMDIGKLSKLERLVLRANNLTGTLPPSLMNCVNLVMLDLRINSLKGNLSAFNFSGLLRLTTLDLGNNNFTGILPPTLYACKSLKAVRLASNQLEGQISPDILGLHSLAFLSVSTNKLTNVTGALRILMRLKNLSQIPGWLVNLKKLEVLDLSYNQISGSIPPWLGTLPQLFYIDLSFNLLTGKFPMELTRLTALTSQQAYDEVERTYLELPVFANANNVSQMQYNQLSNLPPAIYLGNNSLNDSIPIEIGLLKVLHQLDLSCNQFSGNIPVQISNLTNLEKLYLSGNQLSGEIPVSLTNLHFLSVFNVAHNDLQGQIPTGGQFDTFTASSFEGNPKLCGSVVQRSCLPQNARTAGGHSSRKKLIIGFVIAACFGTVSFISVLIVWILSKRRISPGGDSDEIESETIFASSDGGLHLEVDKEASLVVLFPNKTNEIKDLTIVEILKATEYFSHENIIGCGGFGLVYKATLPDGTTLAIKKLSGDMGLMEREFKAEVETLSTAQHENLVALQGYCVHEGFRLLIYSYMENGSLDYWLHEKDDGPSQIDWPTRLKIAQGASCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLARLILPYQTHVTTELVGTLGYIPPEYGQAWVATMRGDVYSFGVVMLELLTGRRPVDVSKPKMSGELVAWVQQMRSEGKQDQVFDPLLRGKGFEEGMLQVLDVACMCVNLNPLKRPTIREVVEWLKNVGSSN 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00036 1039 PRINTS Leucine-rich repeat signature 454 467 - -
Sebi472g00036 1039 PRINTS Leucine-rich repeat signature 135 148 - -
Sebi472g00036 1039 Pfam Protein kinase domain 762 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00036 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Sebi472g00036 1039 SMART LRR_typ_2 587 611 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 132 156 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 454 478 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 107 131 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 367 391 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 415 437 IPR003591 -
Sebi472g00036 1039 SMART LRR_typ_2 318 342 IPR003591 -
Sebi472g00036 1039 FunFam Leucine-rich repeat receptor-like kinase 44 163 - -
Sebi472g00036 1039 Gene3D Transferase(Phosphotransferase) domain 1 837 1039 - -
Sebi472g00036 1039 SUPERFAMILY L domain-like 220 646 - -
Sebi472g00036 1039 Gene3D Ribonuclease Inhibitor 163 262 IPR032675 -
Sebi472g00036 1039 Gene3D Ribonuclease Inhibitor 263 362 IPR032675 -
Sebi472g00036 1039 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 348 1033 - -
Sebi472g00036 1039 Gene3D Phosphorylase Kinase; domain 1 726 836 - -
Sebi472g00036 1039 ProSiteProfiles Leucine-rich repeat profile. 456 479 IPR001611 GO:0005515
Sebi472g00036 1039 ProSiteProfiles Protein kinase domain profile. 761 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00036 1039 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 191 445 - -
Sebi472g00036 1039 ProSitePatterns Protein kinases ATP-binding region signature. 767 790 IPR017441 GO:0005524
Sebi472g00036 1039 Pfam Leucine rich repeat N-terminal domain 42 73 IPR013210 -
Sebi472g00036 1039 Gene3D Ribonuclease Inhibitor 41 162 IPR032675 -
Sebi472g00036 1039 SMART serkin_6 761 1032 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi472g00036 1039 Pfam Leucine rich repeat 448 491 IPR001611 GO:0005515
Sebi472g00036 1039 Pfam Leucine rich repeat 344 404 IPR001611 GO:0005515
Sebi472g00036 1039 Gene3D Ribonuclease Inhibitor 363 665 IPR032675 -
Sebi472g00036 1039 SUPERFAMILY Protein kinase-like (PK-like) 745 1032 IPR011009 -
Sebi472g00036 1039 Pfam Leucine Rich Repeat 589 611 IPR001611 GO:0005515
Sebi472g00036 1039 FunFam Leucine-rich repeat receptor protein kinase MSP1 729 836 - -
Sebi472g00036 1039 ProSiteProfiles Leucine-rich repeat profile. 589 612 IPR001611 GO:0005515
Sebi472g00036 1039 SMART LRR_sd22_2 454 469 - -
Sebi472g00036 1039 SMART LRR_sd22_2 587 613 - -
Sebi472g00036 1039 SMART LRR_sd22_2 107 126 - -
Sebi472g00036 1039 SMART LRR_sd22_2 132 147 - -
Sebi472g00036 1039 FunFam Tyrosine-sulfated glycopeptide receptor 1 446 662 - -
Sebi472g00036 1039 FunFam Leucine-rich repeat receptor-like protein kinase 837 1039 - -
Sebi472g00036 1039 SUPERFAMILY L domain-like 55 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00036 Sebi-Chr472 370139 373377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00036 13 695 Miscellaneous Gene Families AT1G17240 48.564 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Sebi472g00036 Pkinase 6.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00036 - - ccaj:109797788 1633.62