Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00026 ATGAGTGACTCGTCGTTGGCAAGTGACAATTTGGGTGATTCCCCAGCGGTTGAGTTAACCGGCAAGATTATGGTGGCGGCTATAATTGTCCTATTCATGGTTGTTGTATGTGCTGTGGCCTTCCATCTCTTTGCCAGAGGCTACTGGTGGCGCATTGGAGACAGTATTGCTCCGCAATCCCGCCGCCGCCGCCGCTTTTCCTTTAACTCCGGTCAAGATAGTGCTCTTCGAGCTGGCCTTGATCCTTCTGTCCTAAGGTCCCTACCCGTACTGGTGTTCCAACCCCAAGACTTCAAGGATGGTTTAGAATGTGCTGTTTGTCTCTCTGAACTTGTTGAAGGAGAAAAGGCTAGACTTTTACCCAAATGCAATCATGGGTTTCACGTGGATTGCATTGATATGTGGTTCCAATCCCATTCTACCTGCCCTATATGCAGGAACCCTGTTGGCTCCAAATCCGGTATAAGTACTAGTGCCTCGGAGAATATTGAATCATCATCAGGTGCAGAAAGTTCAGCTGACGTAAGTGGCTTAGAAACTCCAATTTTTCCTACAAATGTGTTGATTTGGGGGAACCAGACCCAAATAAGTTCTACTGGTGATTCTTTGGAAGAAAGTACTTCTCAGCCACCTTGCTCCTCCTCATCCTCTTCGGCGGGTAGTTGTAGTGATAATAATGGAAGGCTAGTGATTGATATACCAAATGAGATCACTTCATCCTCTTTATCACCTTCTGTTAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATTACAGGGAGACTGAGGTCATTGAAGAGACTTCTAAGCAGGGACAGAAGGCTAAATCCTTGGAGTCCAACTTCTACTGATTTGGAACAGCAAGGGGAGGACAGAGCTAGGAATTTGCCAATTCTGTTCATTATTTATTTTTTTAAGTACATATGCTTCACACAGCAACTTGTGATGTTCTTGTACAGTGAGCTCTCAGAATTGTGCTATTGCTCTTCCAATACATGCAGAGAATGGATACGGAGAAGAGTGGGTTCAAGTGTCTTTATTGTATAA 1047 0.4479 MSDSSLASDNLGDSPAVELTGKIMVAAIIVLFMVVVCAVAFHLFARGYWWRIGDSIAPQSRRRRRFSFNSGQDSALRAGLDPSVLRSLPVLVFQPQDFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPICRNPVGSKSGISTSASENIESSSGAESSADVSGLETPIFPTNVLIWGNQTQISSTGDSLEESTSQPPCSSSSSSAGSCSDNNGRLVIDIPNEITSSSLSPSVSRFAEDELKSPITGRLRSLKRLLSRDRRLNPWSPTSTDLEQQGEDRARNLPILFIIYFFKYICFTQQLVMFLYSELSELCYCSSNTCREWIRRRVGSSVFIV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00026 348 Pfam Ring finger domain 103 146 IPR001841 -
Sebi472g00026 348 SMART ring_2 104 145 IPR001841 -
Sebi472g00026 348 MobiDBLite consensus disorder prediction 198 223 - -
Sebi472g00026 348 MobiDBLite consensus disorder prediction 156 176 - -
Sebi472g00026 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 154 IPR013083 -
Sebi472g00026 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 253 - -
Sebi472g00026 348 FunFam RING-H2 finger protein ATL3 72 151 - -
Sebi472g00026 348 CDD RING-H2_EL5-like 103 146 - -
Sebi472g00026 348 MobiDBLite consensus disorder prediction 156 174 - -
Sebi472g00026 348 SUPERFAMILY RING/U-box 84 152 - -
Sebi472g00026 348 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00026 Sebi-Chr472 267919 268965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00026 18 276 C3H Transcription Factor Family AT1G53820 42.321 5.12e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00026 - - aip:107646165 323.553