Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00020 ATGACGATTAAGGAAGCATTCGGTAGAATCTCTGATTCCCACTCCAAGAAGAATAACAAGAAGCTCTTGTTGCTTCTCTTAGCTACTTTACTCCTCGTGGCCGCTGTTTTCGGCATTGTCGTCGGATCCCACAAAAAGGCTGAGTCCTCCCTTTCGCCTTCCCATGCCATTATCAAAAGCGCTTGCAGCAGCACATTATACCCAGAACTGTGTTTTTCATCCATCAGCTCTGAACCTAATGCAACGCAGAAAGTTTCGAGCCACAGAGACGTGATAGAGGTGGCCTTGAACGTTATCTTTAAAATTGTTGAGCGCAATCACTTGACGGTGGAGAAGCTCTTAACCCGTAAGGGACTGACCAAGAGGGTCAAAACCGCCCTCAACGATTGCTTGGAAACCATGGATGATACCCTCTACGATGTTGAAAAGGCCAAAGAAGACCTCAAACACTACCCATCAAAAAAGTCTCCCTATCAGTATGCGGATGACCTTAAAACAGTCATCAGTTCCGCTATCACCAACCAGCTTACTTGCTTGGATGGCTTCTCTCACGAGAATGTCGAGAAGCACTTCAGGAAATCATATCTGGAGGCAGGGCAAGTGCATGTGGAGCACCTGTGCAGCAACGCATTGGCTATGACCAAGAACCTCACTGACACCGACATAGCTAATTACCAGAACAACAGGAAACGACTGATGGAGCAGGAGGAGGATGGGATCAAGTGGCCTCAGTGGATTTCCGCCTCGGACAGGCGTCTTCTACAGGCGGATTCAGTGACTCCTAACGTGGTGGTGGCGGCGGACGGCAGCGGGAACTACAGGACAGTGTCAGCTGCGGTGGCTGCAGCTCCAGAGAAGAGTAGCAAGAGATATGTAATTAGGATAAAAGCAGGAGTGTACAGAGAGAATGTGGATGTGCCAAGGACGAAGACGAATATCATGTTCGTGGGTGATGGCAATCAAAACACAATCATCACAGCCAGTAGAAATGTGGTTGACGGTAGCACAACTTTTAATTCTGCCACAGTCGCTGTAGTGGGTGAAAGATTCTTGGCACGAGGAGTAACCTTCCAGAACGCAGCAGGGCCTTCAAAGCACCAAGCGGTGGCCTTGCGAGTTGGAGCTGACCTGGCAGCGTTCTATAAGTGCGGCTTCATAGCATACCAAGACACCCTTTATGTCCACAGCAACCGTCAATTCTTCGTCAAGTGCTACATAGCAGGATCTGTGGACTTTATCTTTGGCAACTCAGCTGCTGTGCTCCAAGACTGTGACATCCGCGCCAGGCGTCCCAATCCAAGCCAAAAGAACATGGTCACCGCACAAGGACGCACTGACCCCAATCAAAACACAGGCATTGTCATCCAAAAATGTAGGATTGGTGCCACCTCGGATTTGCAAGCCGTCCTAAGCAGCTTCCAAACGTATTTAGGGAGACCATGGAAGGAGTACTCTAGGACTGTCGTCATGCAATCAACCATAAGTAATGTGATTCATCCAGCTGGGTGGTTTGAGTGGGATGGGAATTTTGCCTTGAACACGTTGTATTATGGAGAGTATCAGAACAGTGGGGCTGGTGCGGACACCTCTAAGAGGGTTAAATGGAAAGGGTTTAAGGTCATTACAAGTGCTTCTGAGGCACAGGCGTTTACTCCTGGGAGTTTCATTGCAGGTTCCAGCTGGTTGCCTTCTACTGGCTTCCCTTACTCTCTTGGGCTGTAG 1722 0.4907 MTIKEAFGRISDSHSKKNNKKLLLLLLATLLLVAAVFGIVVGSHKKAESSLSPSHAIIKSACSSTLYPELCFSSISSEPNATQKVSSHRDVIEVALNVIFKIVERNHLTVEKLLTRKGLTKRVKTALNDCLETMDDTLYDVEKAKEDLKHYPSKKSPYQYADDLKTVISSAITNQLTCLDGFSHENVEKHFRKSYLEAGQVHVEHLCSNALAMTKNLTDTDIANYQNNRKRLMEQEEDGIKWPQWISASDRRLLQADSVTPNVVVAADGSGNYRTVSAAVAAAPEKSSKRYVIRIKAGVYRENVDVPRTKTNIMFVGDGNQNTIITASRNVVDGSTTFNSATVAVVGERFLARGVTFQNAAGPSKHQAVALRVGADLAAFYKCGFIAYQDTLYVHSNRQFFVKCYIAGSVDFIFGNSAAVLQDCDIRARRPNPSQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQAVLSSFQTYLGRPWKEYSRTVVMQSTISNVIHPAGWFEWDGNFALNTLYYGEYQNSGAGADTSKRVKWKGFKVITSASEAQAFTPGSFIAGSSWLPSTGFPYSLGL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00020 573 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
Sebi472g00020 573 Pfam Pectinesterase 262 558 IPR000070 GO:0030599|GO:0042545
Sebi472g00020 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 219 IPR035513 -
Sebi472g00020 573 CDD PMEI-like_3 60 218 - -
Sebi472g00020 573 SMART PMEI_2 53 213 IPR006501 GO:0004857
Sebi472g00020 573 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Sebi472g00020 573 FunFam Pectinesterase 256 573 - -
Sebi472g00020 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 218 IPR035513 -
Sebi472g00020 573 Coils Coil 215 235 - -
Sebi472g00020 573 NCBIfam pectinesterase inhibitor domain 29 218 IPR006501 GO:0004857
Sebi472g00020 573 FunFam Pectinesterase 54 218 - -
Sebi472g00020 573 Pfam Plant invertase/pectin methylesterase inhibitor 57 213 IPR006501 GO:0004857
Sebi472g00020 573 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Sebi472g00020 573 PANTHER PECTINESTERASE 31 563 - -
Sebi472g00020 573 Gene3D - 256 573 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00020 Sebi-Chr472 219067 220867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00020 2 573 Carbohydrate Esterase AT3G14310 64.370 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00020 K01051 - rcu:8276562 808.52