Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00018 ATGGATTCTATCAATTCGTTTAAGGGGTATGGTAAGGTTGAGGAGGCGGAGCATGAAGCATTCAAGAAGAAGACACGTAGGCGTCTCATCATCCTCATCGTCTCCTCCATAGTACTTGTGGCCGTCACCGTCGCCGCAGTTGCAAGCACTGTCACTGTCACACACAACAACTCCTCATCGGATTCCAAATCCATCTCCTCCTCACTGAAGGCGGTGTGCAATGTCACTCTATATCCCAACTCCTGTTTCTCCAGCATCTCTTCACTTCCCAACTCTAACACCACCACCGATCCTATTCTTCTCTTCGACCTCTCCCTCCGCGTTGCCATCCACGCCCTCTCCAACCTCTCCCAACACCTCCGAAGAATTTCCACTTCCAAGGACATGCAAAGCGCCATCGACGTCTGCGGAACAGTCCTCGACGACGCCCTCCGTCGCTTCAACGATTCCGCCTCCTCGCTCGTTGGGGCCGGAAAGATCCTCCCCGCCACCACCATCAATGACATCACAACCTGGCTCAGTGCAGCCATCACCGACCAAGAGACCTGCTTAGACGCTTTCAGGGAGTTGAATTCAACCGCTGCTGACGTCATTCTTCACGATTTGAAAACCGCCATGAAAAACTCCACCGAGTTTGCCAGCAACAGCTTGGCCATTGTCACCAAGATCCTGGGCCTGATCTCCAACTTCAAGGCCCGAAGATTGCTGGGCCTGGGCCGGCCCAACACGGGCTTACCTGAGTGGGTGGACCGGAGGCTGCTTCAGGAGCAGGTGGTGCCGGATGCGGTGGTCGCAAAGGACGGGAGCGGGCACTATAAGACGATCAATGAGGCGGTGGCGGCGGTGAAGGAGAAGAGCATGAAGAGGTTCGTGATATATGTGAAGGAAGGGACTTATGTGGAGAACGTTGAGTTGAATAAGGATCTGTGGAATGTCATGATATACGGTGATGGGAAGTACAAGACCATCATCTCCGGTAGCCGCAACTTCGTCGACGGCACTCCCACTTTTCACACTTCTACTTTCGCTGCTAAGGGAAGGGGATTCATTGCGAAGGACATAGGGTTTGTGAACAGTGCAGGTGCAGAGAAGGAGCAGGCGGTGGCATTGCTATCTACCTCGGATGAATCGGTGTTCTGGAGGTGCTCATTTGATGGTTTCCAGGATACTCTGTATGCCCATTCCAACAGGCAGTTCTACAGTGAGTGTGACATAAAAGGCACCATAGACTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAATTGCAAAATTATGGCCAAGGAACCTTTAGCAAAGCAGTACAACACAATCACAGCTCAGGGCAAGCAGGACCCCAACCAGAACACTGGAATTGTAATCCACAAATCCTCAATCTCAGCACTGGACAATGAAAATCTTCAGGCTCCCACATACCTTGGTAGGCCTTGGAAAAATTACTCCACCACTGTTGTTATGCAATCTGATATTGGGTCATTATTGAACCCAAATGGGTGGATAAGCTGGGACCCCACTGTTGACCCTCCAAACACCATATTTTATGCTGAATACCAAAACACCGGACCAGGATCAAACACTTCAGAGAGGGTTAAATGGAGTGGTTATAAGCCCGCTCTTACAAAAGATGAGGCAGAGAAGTTCACCGTCCAAACCTTTATCCAAGGCCCAAGGTGGTTGCCGAATGCTTCAGTGAACTTTCAGCCCACCTTGTAA 1713 0.5079 MDSINSFKGYGKVEEAEHEAFKKKTRRRLIILIVSSIVLVAVTVAAVASTVTVTHNNSSSDSKSISSSLKAVCNVTLYPNSCFSSISSLPNSNTTTDPILLFDLSLRVAIHALSNLSQHLRRISTSKDMQSAIDVCGTVLDDALRRFNDSASSLVGAGKILPATTINDITTWLSAAITDQETCLDAFRELNSTAADVILHDLKTAMKNSTEFASNSLAIVTKILGLISNFKARRLLGLGRPNTGLPEWVDRRLLQEQVVPDAVVAKDGSGHYKTINEAVAAVKEKSMKRFVIYVKEGTYVENVELNKDLWNVMIYGDGKYKTIISGSRNFVDGTPTFHTSTFAAKGRGFIAKDIGFVNSAGAEKEQAVALLSTSDESVFWRCSFDGFQDTLYAHSNRQFYSECDIKGTIDFIFGNAAVVFQNCKIMAKEPLAKQYNTITAQGKQDPNQNTGIVIHKSSISALDNENLQAPTYLGRPWKNYSTTVVMQSDIGSLLNPNGWISWDPTVDPPNTIFYAEYQNTGPGSNTSERVKWSGYKPALTKDEAEKFTVQTFIQGPRWLPNASVNFQPTL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00018 570 SMART PMEI_2 64 219 IPR006501 GO:0004857
Sebi472g00018 570 CDD PMEI-like_3 71 223 - -
Sebi472g00018 570 Pfam Plant invertase/pectin methylesterase inhibitor 68 219 IPR006501 GO:0004857
Sebi472g00018 570 Pfam Pectinesterase 261 555 IPR000070 GO:0030599|GO:0042545
Sebi472g00018 570 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Sebi472g00018 570 SUPERFAMILY Pectin lyase-like 261 568 IPR011050 -
Sebi472g00018 570 FunFam Pectinesterase 255 570 - -
Sebi472g00018 570 PANTHER PECTINESTERASE 35 560 - -
Sebi472g00018 570 NCBIfam pectinesterase inhibitor domain 38 223 IPR006501 GO:0004857
Sebi472g00018 570 FunFam Pectinesterase 65 224 - -
Sebi472g00018 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 224 IPR035513 -
Sebi472g00018 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 224 IPR035513 -
Sebi472g00018 570 Gene3D - 255 570 IPR012334 -
Sebi472g00018 570 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00018 Sebi-Chr472 208764 211138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00018 1 564 Carbohydrate Esterase AT1G53840 55.822 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00018 - - lang:109360530 711.449