Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi472g00013 ATGGCCAACGAAGAGGACAAAGGCAATGATTTGTATGAGGTTCTGGGGCTGAACAAGGAGTGCTCCAGATCAGAGCTTAGGAATGCTTACAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGTCCGTCGTGGAAGAAGCTAAGAACAAATTCCAGGCAATCCAGCAAGCCTATTCTGTTTTATCTGATGCCAACAAAAGGTTCCTGTACGACGTAGGAGTCTATGACAGCGATGATGACCAAAACGGCATGGGTGACTTCATGAACGAAATGGCAACAATGATGAGCCAAACAAAACCCAGTGAAAATGGGGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTAAAGAAATATTTCAAGCGGATAACGGGAGCACCTCTCATACTGCTGCCAGTGCCACCACTTGTTCTGTTTCATCTACATTCGTGACTTGTAGTGAAAACAGGTGGAGCAGCTCCAAGATACCAAGAAGGGAAAGGGAGTATGAGGAGGAGGTAGCAAGAGACATGAGCTCAGTAGTACAAAGCAGAAAATCTCATCGGCTCATGATGTTTCCTCTAATGACTCTGGCTATTCTGGCAGTTGTGCTTAGGGATGAAGTTGGTGGCATGCTAGATTTTGTGCATTATGGGAAATCCCTGTTGCAAAGCTGGTAG 666 0.458 MANEEDKGNDLYEVLGLNKECSRSELRNAYKKLALKWHPDRCSASVVEEAKNKFQAIQQAYSVLSDANKRFLYDVGVYDSDDDQNGMGDFMNEMATMMSQTKPSENGEESFEELQQLFKEIFQADNGSTSHTAASATTCSVSSTFVTCSENRWSSSKIPRREREYEEEVARDMSSVVQSRKSHRLMMFPLMTLAILAVVLRDEVGGMLDFVHYGKSLLQSW 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi472g00013 221 PANTHER PUTATIVE, EXPRESSED-RELATED 2 167 - -
Sebi472g00013 221 Gene3D DnaJ domain 7 134 IPR036869 -
Sebi472g00013 221 CDD DnaJ 10 66 IPR001623 -
Sebi472g00013 221 Coils Coil 47 67 - -
Sebi472g00013 221 PRINTS DnaJ domain signature 49 69 IPR001623 -
Sebi472g00013 221 PRINTS DnaJ domain signature 30 45 IPR001623 -
Sebi472g00013 221 PRINTS DnaJ domain signature 12 30 IPR001623 -
Sebi472g00013 221 SMART dnaj_3 9 69 IPR001623 -
Sebi472g00013 221 SUPERFAMILY Chaperone J-domain 9 90 IPR036869 -
Sebi472g00013 221 ProSiteProfiles dnaJ domain profile. 10 77 IPR001623 -
Sebi472g00013 221 Pfam DnaJ domain 10 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi472g00013 Sebi-Chr472 174527 177000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi472g00013 12 74 C2H2 Transcription Factor Family AT1G74250 48.485 2.60e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi472g00013 - - lja:Lj3g3v2576120.1 226.868