Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi471g00033 ATGGGAGGCACAGGGATAGGGAGAGGAGGGGATCGGGAGTTGCGACGACATGAGAGGGAGAAGAGTAGTGATTCTGAAGACAGGGAGAGAGATAGGAAGCGGCATAGGAAAGAGGATGACGATTACAAGGGGCGAGAGAGGGAAAGGAGCGCCAGCAAGTCAAACAGGAAAACTGAGGAACTTGAAGCAAGCCCAAGGAAAAAGAGTGATGGAGATGACTCAGATACCAAAGATAAAGAGAGGAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAGGAGGCTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCTGAAAGAGAAAAGCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACAGGTACTGGGAAGCAAAATACAGCTATCGATGTAGATGGAGATGACAAACCTGCTGCTAAGGAACCTATGGAGTCGATGGCGGTAGATGTTGATAATGGAACAGTTGCATCTGATTTACAAAATGGAGCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTTACCTCATCACTTTCTGATAAAGCTGCAGACTTGAAACCCAAGGATAAAGGGGATGAACGAAATGAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAAACTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTCCTGCCAATGTTGAGGCATATCAAAGATCAACCACCAGTTGTTGCAGGAGATGGTCCTATTGGGCTTATTATGGCCCCTACAAGAGAACTCGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTACTGGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGCACAGCTAGTTGAGGTGAGGCCTGAAAATGAGAGGTTCCTTAGACTCTTGGAAATATTGGGAGAATGGTATGAGAAAGGAAAGATCTTGATATTTGTCCACTCACAGGAGAAGTGTGATGTTTTATTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTACGAAGATTATGTACATCGTGTTGGACGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTATTTCTGAGGAAGATGCAAGATATGCCCCAGATCTGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACGAAAATGAACTCTACTGCAATGCCTACTCCTATCTCTGCTGCCCAGCTGATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACTGCAACAGTCCTGCCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATGAACCTGCAGCACAACTTGGCAAAAATACAATCCGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTAGGTGGAAAGTTACACACAAGGAAACTTAG 2187 0.4508 MGGTGIGRGGDRELRRHEREKSSDSEDRERDRKRHRKEDDDYKGRERERSASKSNRKTEELEASPRKKSDGDDSDTKDKERKPTREEEMEDEQRRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGTGTGKQNTAIDVDGDDKPAAKEPMESMAVDVDNGTVASDLQNGAAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAADLKPKDKGDERNEEISKMTPEEAAVYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITLFLRKMQDMPQICFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKMNSTAMPTPISAAQLISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAMNLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKET 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi471g00033 728 MobiDBLite consensus disorder prediction 1 170 - -
Sebi471g00033 728 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 278 306 IPR014014 GO:0003724
Sebi471g00033 728 MobiDBLite consensus disorder prediction 9 131 - -
Sebi471g00033 728 MobiDBLite consensus disorder prediction 583 614 - -
Sebi471g00033 728 Pfam DEAD/DEAH box helicase 303 416 IPR011545 GO:0003676|GO:0005524
Sebi471g00033 728 MobiDBLite consensus disorder prediction 233 249 - -
Sebi471g00033 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 540 IPR027417 -
Sebi471g00033 728 PANTHER RNA HELICASE 413 590 - -
Sebi471g00033 728 Pfam Helicase conserved C-terminal domain 422 530 IPR001650 -
Sebi471g00033 728 SMART helicmild6 449 530 IPR001650 -
Sebi471g00033 728 MobiDBLite consensus disorder prediction 583 597 - -
Sebi471g00033 728 SMART ultradead3 297 519 IPR014001 -
Sebi471g00033 728 CDD SF2_C_DEAD 411 539 - -
Sebi471g00033 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 412 IPR014001 -
Sebi471g00033 728 Gene3D - 240 429 IPR027417 -
Sebi471g00033 728 MobiDBLite consensus disorder prediction 226 249 - -
Sebi471g00033 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 580 IPR001650 -
Sebi471g00033 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 560 IPR027417 -
Sebi471g00033 728 Coils Coil 86 123 - -
Sebi471g00033 728 Gene3D - 452 546 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi471g00033 Sebi-Chr471 265573 268649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi471g00033 412 538 Eukaryotic Initiation Factors Gene Family AT3G19760 37.692 2.97e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi471g00033 K12811 - qsa:O6P43_006702 797.349