Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00056 ATGCAAGACCCAACAGCATTCCAACATATGAAGCCCCACTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCCACAAACACCAAATTCTGCTATTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACAAAAGGTGGTACTCTGAGAAACATCCCTGTTGGAGGTGGAAGCAGAAAGAGCACTAAACGTTCATCAAGCTCCAAACGTACCACATCATCTTCCTCATCACCATCAATCTCCTCTGCAGCCCCAGCTACAGAGGCTGACCCGACCCGGGTTTACACTGGCCCGGTTGATCAAGACCAACAGGTGCTGAACACTGGTGGGAGTTTCAGTTCCCTTTTGGCATCAACTGGGCATTTTGGGAGCCTCTTTGAGGGTATGAATTCAAGTGGGTCAAGTCTAAAAATGGTGCAAATGGGTGAATTTGGGGAAAATATGAGAAGTTATGACCCAGTTGTGAATTCGGATTCGGGTAGTAACCCGGGATTGGAGATGCAGAGTAATGGTAGCTCAGAGAGTTTACTGGGTATGCAAAATGGCGATTCAGGCTGCTGGAATGGTAGTAGCCATGGTTGGTCTGATCTTGCAATGTACACACCTAGCTCAAACTTTCAGTAG 657 0.4673 MQDPTAFQHMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKSTKRSSSSKRTTSSSSSPSISSAAPATEADPTRVYTGPVDQDQQVLNTGGSFSSLLASTGHFGSLFEGMNSSGSSLKMVQMGEFGENMRSYDPVVNSDSGSNPGLEMQSNGSSESLLGMQNGDSGCWNGSSHGWSDLAMYTPSSNFQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00056 218 MobiDBLite consensus disorder prediction 167 195 - -
Sebi470g00056 218 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Sebi470g00056 218 MobiDBLite consensus disorder prediction 61 107 - -
Sebi470g00056 218 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Sebi470g00056 218 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 173 IPR045174 GO:0003700|GO:0006355
Sebi470g00056 218 MobiDBLite consensus disorder prediction 69 97 - -
Sebi470g00056 218 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00056 Sebi-Chr470 807368 808024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00056 5 137 C2C2-Dof Transcription Factor Family AT1G51700 56.849 4.20e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi470g00056 zf-Dof 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00056 - - gmx:100790822 283.108