Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00034 ATGGCTTTAGTTTCTACTGGGTATCACTCAATCGATAGTCTTTGTGGAAGAAGGCAAAACTGGAGATTGAAGGTCAAGCTGGTTAGGAAGTGGAACATGGCAGCCGTTGCAACTCCGGATGACCCTTATGCTCTGCAGATGCTGTTTGTGGATGAAGAGGGGGGTAGGATTGAGGGAACCGTTCAAAAGCACTTAATGCTAAAATTCTCGCGTTGCTTGGTGGAAGGCCATGTTTACAAGGTTATGAATTTTGGAATTATCCGAAATGAAGGCAAATTCCGTGCTTCTCGACATGATTATAAGATCATATTCAACTCCAACACTCAAGTTTCACGCTGCCAAGATGCCTCCGTTCCATTCCTAGGGCTATCATTCAACAATACGTCTGATATCAAGAAGACGAAAGGTTCTTGTGACTACTTATTGGACTTCATGGGGATGGTTACGGCAGTGTCGAAGGAGATACGAGTAAACAAAGAGGAGAGGGTTACCCGTTTGGTTTTGTTGGACTTGGTGGACGACATGGGGACGATCCGATGCGCTATGTTTGGAACCATGGTTGATATCGTTTTAGAGTGCCTTTCTCAACCTCGGATTGGACTTCCAGTGGTGATTATCCAGTTAGCAAAGGCAAATGTGTACAAGGGACGAGTGGGTATTCAAAATGTGATGAATGCCACTAAGATATGGTGGAATCCCTTGATCCCAGAATGTATTGAGTTTAGAAATGGGTATGGTTCACACAGCCAGGTAGCATTTCATGAGGTAGAATCGGACATGGAGATCTCATTAATATCACAAAGGCCTAGGACTGTGTCCCTGAGGGAGGAGTTTATGAAACAATATCCAAGGAAGACCGTGGCACAGCTGCTCCAAGTTTGGGAGGTTGTTCATGTCGGAAATTTCATCACCATGGCCACCATTACTGAGATCGTTGATGAAAAATTGTGGTGGTACACTGCGTGCCCCTGTTTGAGAGCTGTTAACTTTGATAGAGGTTACCCTTTCTGCACTCATTGCAAGCGGATCGTATTTAACATGTCTCCAAGGTTTAAGCTGAAGGTGTTGGCAAGTGATGGGGAAGATGCTGCGCACTTCATCATGTTTGATGCTGAATGCTCCCTGCTGCTGAAGAAGTCTTGCCAGGAATTGCTTGATGAACAAGAGGACCCTTCATTCGATGCATACCCTGAAGAGATATTCAAGTTGGTTGGGCGAGATGTGCTGTTTCGCATTGAGGTGAAGGAACATCCTTTTAATTCCTTTGATGATAGCATCAAGGTTAGGCGGGTTTGTTTTGATTGCTCAATATTGGATGAGTTTAAGGAATGTGTGGACGATGACACTCCAGTGAAGCTTAAGTTTGCTCCAAGTTTCACGAAACTTCATGAAGAACGAGACATGAAAACTGTCCTAGACATGTCTCCGCAATGCAAATCTCTTCTAACCGATGCGGACACAACGCCGTCTTCAGTTGGGCAATCATCATCTGCTGCTCAGGCCAGTGGTAGTTGTTCTAAGAGGGATGTTGACGAGTCATTGGAAAAATCATGGGAATTAAATAAGAGACCAAGGATGACAGGGGTTAACATAGAGGGGGAATGA 1605 0.4467 MALVSTGYHSIDSLCGRRQNWRLKVKLVRKWNMAAVATPDDPYALQMLFVDEEGGRIEGTVQKHLMLKFSRCLVEGHVYKVMNFGIIRNEGKFRASRHDYKIIFNSNTQVSRCQDASVPFLGLSFNNTSDIKKTKGSCDYLLDFMGMVTAVSKEIRVNKEERVTRLVLLDLVDDMGTIRCAMFGTMVDIVLECLSQPRIGLPVVIIQLAKANVYKGRVGIQNVMNATKIWWNPLIPECIEFRNGYGSHSQVAFHEVESDMEISLISQRPRTVSLREEFMKQYPRKTVAQLLQVWEVVHVGNFITMATITEIVDEKLWWYTACPCLRAVNFDRGYPFCTHCKRIVFNMSPRFKLKVLASDGEDAAHFIMFDAECSLLLKKSCQELLDEQEDPSFDAYPEEIFKLVGRDVLFRIEVKEHPFNSFDDSIKVRRVCFDCSILDEFKECVDDDTPVKLKFAPSFTKLHEERDMKTVLDMSPQCKSLLTDADTTPSSVGQSSSAAQASGSCSKRDVDESLEKSWELNKRPRMTGVNIEGE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00034 534 MobiDBLite consensus disorder prediction 508 522 - -
Sebi470g00034 534 CDD RPA1_DBD_C 302 431 IPR047192 -
Sebi470g00034 534 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Sebi470g00034 534 MobiDBLite consensus disorder prediction 483 534 - -
Sebi470g00034 534 Gene3D - 275 444 IPR012340 -
Sebi470g00034 534 Gene3D - 8 116 IPR012340 -
Sebi470g00034 534 SUPERFAMILY Nucleic acid-binding proteins 282 443 IPR012340 -
Sebi470g00034 534 Gene3D - 117 255 IPR012340 -
Sebi470g00034 534 PANTHER OS03G0429900 PROTEIN 7 428 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi470g00034 534 MobiDBLite consensus disorder prediction 483 507 - -
Sebi470g00034 534 SUPERFAMILY Nucleic acid-binding proteins 7 117 IPR012340 -
Sebi470g00034 534 Pfam Replication factor-A C terminal domain 302 441 IPR013955 -
Sebi470g00034 534 CDD RPA1_DBD_A_like 22 110 - -
Sebi470g00034 534 SUPERFAMILY Nucleic acid-binding proteins 124 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00034 Sebi-Chr470 557466 560053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00034 9 421 Core DNA Replication Machinery Family AT5G08020 20.991 1.59e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00034 - - lja:Lj6g3v0884310.1 328.176