Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00028 ATGCCGGATGAAATTATGGGTTGCCCCACTGTCAACCAAGATTTGGACCGCATAGCCCCTGATAGATCCTGTAACCCGAAATGTCCTTGGGGTCCATTGACCAGAGAAGGCGTGGAGACTAATGAGCCCTGCCTCTTGCTGTGCGTCCTCAGTTGGCTGGAAGTCCTCTGCTGGTTTAGGGGAATGTGGGGAGTGGTGATGATGGGGTTGGGTCTCAAGGATGGAGGTGCGGTTTGCAAGGTCATGGAGTGTATTAGAAAGGTTAAACTTCTGATGAGAGTTCATCACAAAAATCTGACTTCTCTTATTGGGTATTGCAATGAAAAAAACAATATAGGGCTCATCTATGAATATATGGAAAATGGAAACTTGGATGAACATCTTTCAGGAAAATATAGCAGGGCAAAGTTCTTCACTTGGGAAGATAGACTCCGAATAGCAATAGATGCAGCCCAAGGACTGGAATATCTGCATAATGGTTGTAAGCCACCTATAATCCACAGAGATGTGAAAACTACAAATATTTTGTTAAATGAAAACTTCCAAGCAAAACTGACTGATTTTGGCCTATCCAAAACCTTTCCTACTGATGGAGGCACACATCTGTCCACTGTTGTTGCTGGAACTCCCGGTTACCTTGATCCTGAGTACAACATATCAAGTAGGTTGACAGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTATTTTGGAGATAATCACAAGTCAACCAGCTATATCAAAAACGCATGAGAAGATTCACATAAGTCAGTGGGTTAGCTCTATGCTTTCAAATGGAGATATTAAAAATATTGTTGACTCAAGATTACATGAAGACTTTGACACTAGCTCTGTTTGGAAAGCTGTTGAAATAGGAATGGCTTCTGTGTCTATCAATCCTGCTAGAAGGCCAAACATGAGTGACATAGTGACAGAGCTAAAGGAGTGTTTGGCTACAGAGTTAGCTAGAAAAAGGTTGGGTCGTGGCACTGAAAACAATGATTCAATTGAGTTGGTATCCTTAAATCTTACAACTGAACTCGGTCCCCTAGCTAGGTAA 1059 0.4183 MPDEIMGCPTVNQDLDRIAPDRSCNPKCPWGPLTREGVETNEPCLLLCVLSWLEVLCWFRGMWGVVMMGLGLKDGGAVCKVMECIRKVKLLMRVHHKNLTSLIGYCNEKNNIGLIYEYMENGNLDEHLSGKYSRAKFFTWEDRLRIAIDAAQGLEYLHNGCKPPIIHRDVKTTNILLNENFQAKLTDFGLSKTFPTDGGTHLSTVVAGTPGYLDPEYNISSRLTEKSDVYSFGVVILEIITSQPAISKTHEKIHISQWVSSMLSNGDIKNIVDSRLHEDFDTSSVWKAVEIGMASVSINPARRPNMSDIVTELKECLATELARKRLGRGTENNDSIELVSLNLTTELGPLAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00028 352 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 119 326 - -
Sebi470g00028 352 Pfam Protein tyrosine and serine/threonine kinase 82 313 IPR001245 GO:0004672|GO:0006468
Sebi470g00028 352 Gene3D Transferase(Phosphotransferase) domain 1 120 334 - -
Sebi470g00028 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Sebi470g00028 352 Gene3D Phosphorylase Kinase; domain 1 74 119 - -
Sebi470g00028 352 SUPERFAMILY Protein kinase-like (PK-like) 61 313 IPR011009 -
Sebi470g00028 352 PANTHER OS07G0107800 PROTEIN-RELATED 80 317 - -
Sebi470g00028 352 SMART serkin_6 60 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi470g00028 352 ProSiteProfiles Protein kinase domain profile. 1 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00028 Sebi-Chr470 501229 503895 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00028 60 352 Receptor kinase-like Gene Family AT1G51850 55.776 6.27e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi470g00028 PK_Tyr_Ser-Thr 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00028 - - gmx:100794504 449.899