Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00017 ATGAATGTGACAGATAACATGAAAAGAGAAGGAGCATGTCCATGGATTGTGACCTTAATGTTAAACGTATGCGTATGGCTTGCCTTACTTCCACTCTGTATTACTCATGTCAATTCAGAACTAGACAAACCTGTTGCAAGAGATATTGTTAACGATAAACATCCTGGTTTCATAAGCATTGATTGTGGATCAAAAACAGATTACTTTGACAGTGATATTGGAATTTGGTATCAATCAGACAAAGAGTTTGTGAAAACAGGAACGAATCATCTGATTTCTTTAACTAAAGACTTAAACTATCTCTACTTTGGGAGACGGTTGAACACATTGAGATACTTTCCAGAAGGAGAGAGGAACTGCTACAGGTTGAAACCAGAGCAGGGGAAAAATAATAGTTATCTGATCAGAGCTTTCTTTGCATATGGAAATTATGACGGCAAAAATCAAACCCAATCTTTTGAACTGCATCTTGGAGTCAATCGTTGGGAAAATGTTAGTGTTGGTCTCTCTGGTTACAGTTTCGCGGAGGTGATTCACACTCCGTCAAGTGACAGCATAGATGTGTGCCTTGTAAAGACTGGTCCAACAATCCCTTTCATTTCTTCCTTAGAATTACGGCCTTTGAACAATTCCATTTATCAGAATCATGAGATCATGTCCAGCACTGATCCACAGCCACTTCTAAGGCTTGAAGTCAGGGTTGATGCTGGCTCCCCTCAATTGCCTCCGCCGGATTATAACAAGTACAAAGATGACGTGTATGATCGGATGTGGCGTTGTGACCCAAATTACAATGAGAGTGGTTGGTATCCGTTGGAATTGGAAGAAGAATCAATTGATATTGGTCCTGGAAGCAATGGTGATGCTTATAAATTGCCAGGCCAAGTATTAAGGAGTGCAGCTGTAGCCAATTCATCGGATTTTCCCTTAGAATTCGACTATGACACTGTGTTTGATGAGCCCCTTGACAGGCCTTTTGAGTATCTTGTCTACTTCCACTTCGCTGAGATTCAGAAACTTCCAGATGGGGAAAAAAGAATAATCGGTATCACCCTTAACTCTAAACCCGTTCTCTCACAGCCTTTGGAGCTTGAATACTTGAAGCCCGTTACTCTTAACTACTCAACTCAAGGTGATGTCTGGTTTAGCATAAGCGCAACGTCACAATCGGATGCTCCCCCTATCCTCAACGCCTATGAGATCTATCAGTTGATAACGGAACTTAGTTCATCAACAGACACTCAAGATGTTAGTGCTATTGAGGATATTAAAAGCACCTACCAGATCTCCAGATTGAATTGGCAAGGAGACCCCTGTCTTCCAAATCAATATGCATGGGAGGGTCTTATTTGCAGCTCTGCAGACACCAATCCTTCTCCGAGGATCACATCTTTGAACCTGAGTTCAAGCAATCTGGCGGGACAGATAACTACTTCATTCTCATATCTCACAGAACTAGAATTCCTGGATTTGTCACACAACGACTTGGAAGGACCTCTTCCGGAATTTCTGGCAGAATTGCCAAAGTTAAAAGTCCTTAATTTAACAGGGAACAAGCTTTCGGGTCCAATTCCTAAGCCTCTCAAGGAAAAGGCAGATACCACTTTGCAATTAAGTGTGGCTGATAATCCTGATCTTTGTATGACGGATCCATGCAAAAAGAAGAACTTTGTTGTACCACTTGTTGTTGCATCACTTTCAGCTTTAATTTTAATCCTCTTCATTTCTCTTGCATTTTGGATATACAGAAGACGAAAAGTTGTGCGTTCTGATTCTAAGAAGGGGGGTTCATTGAAATCAAAACTTCAAGCATTCAGTTACAATGAGATTCTCAATATTACTGATAACTTCAAAACTACTATTGGAGAAGGTGGATTTGGAAGAGTTTACTTTGGCATTCTACAAGATCACACCCAAGTTGCTGTTAAGTTGCTTTCACGGTCGTCAATGCAAGGTTATAAGGAATTCCGATCAGAGGCACAACTTCTAATGAAAACTCATCACAGAAATTTAGTCTCTCTAATTGGGTACTGCGATGAAGGTGAAATTAAAGCATTGATTTATGAATACATGGCCAATGGAAATCTCCAACAACATTTATCAGTAGACAATCCAAATGTCTTAAACTGGAATAAGAGACTTAATATCGCAGTTGATGCAGCACAAGGATTAGATTATCTGCATAATGGCTGTACACCACCTCTTATCCATAGAGATTTGAAAACTGCCAACATATTACTAGATCACAACATGAATGCCAAGATAGCTGATTTTGGTCTAAGTAGAGCTTTCGGTAATGATATTGATTCTCATGTATCAACTCGCCCTGCTGGGACACTAGGTTATGTTGATCCAGAATTTCAGAGAACCGGAAACTCAAATAAGAAATGTGATATCTACAGCTTTGGGATAATTCTATTTGAGTTAATCACTGGCCAAAAAGCATTAGTAAGGGCACCTGGAAAAAACATAAACATGCACATACTTGAATGGGTTATTCCAATAGTTGAAAGAGGAGATATTCAAGACATTGTTGATGGGAGGTTGAAGGGAGAATTCAGTATAAATTCTGCATGGAAAGCTGTAGAGATTGCCATGTCATGCACTTCAACAACTGCAGCTGTAAGGCCAGACATCAGCCAAATACTGGTGGATCTAAAGGAATGTATATCTTTGGAGATGGTTCATAAAAATCGTGAAAGTGCAAGAACTACAATTGAATTGACTACTTCTGTGCAGATTGACTTGGAAACTGCTCCATTCGCTAGGTAG 2772 0.3994 MNVTDNMKREGACPWIVTLMLNVCVWLALLPLCITHVNSELDKPVARDIVNDKHPGFISIDCGSKTDYFDSDIGIWYQSDKEFVKTGTNHLISLTKDLNYLYFGRRLNTLRYFPEGERNCYRLKPEQGKNNSYLIRAFFAYGNYDGKNQTQSFELHLGVNRWENVSVGLSGYSFAEVIHTPSSDSIDVCLVKTGPTIPFISSLELRPLNNSIYQNHEIMSSTDPQPLLRLEVRVDAGSPQLPPPDYNKYKDDVYDRMWRCDPNYNESGWYPLELEEESIDIGPGSNGDAYKLPGQVLRSAAVANSSDFPLEFDYDTVFDEPLDRPFEYLVYFHFAEIQKLPDGEKRIIGITLNSKPVLSQPLELEYLKPVTLNYSTQGDVWFSISATSQSDAPPILNAYEIYQLITELSSSTDTQDVSAIEDIKSTYQISRLNWQGDPCLPNQYAWEGLICSSADTNPSPRITSLNLSSSNLAGQITTSFSYLTELEFLDLSHNDLEGPLPEFLAELPKLKVLNLTGNKLSGPIPKPLKEKADTTLQLSVADNPDLCMTDPCKKKNFVVPLVVASLSALILILFISLAFWIYRRRKVVRSDSKKGGSLKSKLQAFSYNEILNITDNFKTTIGEGGFGRVYFGILQDHTQVAVKLLSRSSMQGYKEFRSEAQLLMKTHHRNLVSLIGYCDEGEIKALIYEYMANGNLQQHLSVDNPNVLNWNKRLNIAVDAAQGLDYLHNGCTPPLIHRDLKTANILLDHNMNAKIADFGLSRAFGNDIDSHVSTRPAGTLGYVDPEFQRTGNSNKKCDIYSFGIILFELITGQKALVRAPGKNINMHILEWVIPIVERGDIQDIVDGRLKGEFSINSAWKAVEIAMSCTSTTAAVRPDISQILVDLKECISLEMVHKNRESARTTIELTTSVQIDLETAPFAR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00017 923 Pfam Protein tyrosine and serine/threonine kinase 617 883 IPR001245 GO:0004672|GO:0006468
Sebi470g00017 923 Gene3D Transferase(Phosphotransferase) domain 1 691 913 - -
Sebi470g00017 923 Gene3D Ribonuclease Inhibitor 417 544 IPR032675 -
Sebi470g00017 923 SMART serkin_6 615 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi470g00017 923 CDD STKc_IRAK 621 888 - -
Sebi470g00017 923 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 691 899 - -
Sebi470g00017 923 PANTHER OS07G0107800 PROTEIN-RELATED 58 890 - -
Sebi470g00017 923 Gene3D Phosphorylase Kinase; domain 1 596 690 - -
Sebi470g00017 923 FunFam Leucine-rich repeat receptor-like kinase 415 549 - -
Sebi470g00017 923 Pfam Leucine rich repeat 460 520 IPR001611 GO:0005515
Sebi470g00017 923 Gene3D - 229 404 - -
Sebi470g00017 923 Pfam Malectin-like domain 60 403 IPR024788 -
Sebi470g00017 923 ProSiteProfiles Protein kinase domain profile. 615 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi470g00017 923 FunFam Leucine-rich repeat receptor-like protein kinase 593 690 - -
Sebi470g00017 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 735 747 IPR008271 GO:0004672|GO:0006468
Sebi470g00017 923 SUPERFAMILY L domain-like 429 527 - -
Sebi470g00017 923 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Sebi470g00017 923 SUPERFAMILY Protein kinase-like (PK-like) 600 886 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00017 Sebi-Chr470 355714 361489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00017 45 923 Receptor kinase-like Gene Family AT3G46400 41.603 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi470g00017 Malectin_like 3.3e-82 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00017 - - mtr:25500358 1140.18