Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00016 ATGAACAAATCAAGTTGTTCTAACAAAAGTAATTGTGTGGACTCAAATAAAAAAGAGTTCACCTACTCGGAGGTTTTAAGTATTTCAAACAACTTTGAGAGGGTTTTGGGTAAAGGAGGATTTGGAACTGTCTACCATGGTTGCATAGGTGAAACACAAGTAGCAGTGAAGATGCTCTCTCATTCATCTCAAGGGTTTCGACAATTTCTTACGGAGGCAAAAATTCTGACTATAGTACACCATAGATGCTTGACTCCTCTAATTGGATATTGCAATGAAGGCACGACACTCATCTATAAATACATGCCCAATGGAAACTTGGCAGAGCATCTTTCAGATAAGAATAAACTTTTGCTAGGTTGGAAACAAAGACTTCAAATTGCTCTTGATTCTGCGATAGGTTTGGAGTATCTCCATAATGGTTGTAACCCTCAGATTGTACACAGAGATGTTAAGACTAGCAACATTTTACTTGACAAAGATTTTCGCGAAATACTTACCGGGAAGCCTGTTATCTTAAAATCCGATGAATATACTCACATAATACAATGGGTCAATTCCATGTTAGCTACTGGAAATGTGATTGACAGTATTATGGATTCAAGATTACGAGGAAAATATGACATTGAGAGTGCAAGGAGAGTAATAGATGTTGCAATGGCTTGTGTAGCTCCGAGTTCTATTCAGAGGCCAACAATGAATCAAGTGATGATAGAATTAAACCAATGTTTGTCCATGGAGAATCTTGGTAGTGCATCCAATGAAATCTCAATGGAGCTAATCAGCGGGGAGAGTTCTCTTATGAGGTAG 810 0.3802 MNKSSCSNKSNCVDSNKKEFTYSEVLSISNNFERVLGKGGFGTVYHGCIGETQVAVKMLSHSSQGFRQFLTEAKILTIVHHRCLTPLIGYCNEGTTLIYKYMPNGNLAEHLSDKNKLLLGWKQRLQIALDSAIGLEYLHNGCNPQIVHRDVKTSNILLDKDFREILTGKPVILKSDEYTHIIQWVNSMLATGNVIDSIMDSRLRGKYDIESARRVIDVAMACVAPSSIQRPTMNQVMIELNQCLSMENLGSASNEISMELISGESSLMR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00016 269 Pfam Protein tyrosine and serine/threonine kinase 32 161 IPR001245 GO:0004672|GO:0006468
Sebi470g00016 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Sebi470g00016 269 SMART serkin_6 30 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi470g00016 269 Gene3D Transferase(Phosphotransferase) domain 1 163 262 - -
Sebi470g00016 269 Gene3D Transferase(Phosphotransferase) domain 1 102 162 - -
Sebi470g00016 269 PANTHER OS07G0107800 PROTEIN-RELATED 15 244 - -
Sebi470g00016 269 SUPERFAMILY Protein kinase-like (PK-like) 12 240 IPR011009 -
Sebi470g00016 269 ProSitePatterns Protein kinases ATP-binding region signature. 36 57 IPR017441 GO:0005524
Sebi470g00016 269 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Sebi470g00016 269 ProSiteProfiles Protein kinase domain profile. 30 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00016 Sebi-Chr470 353672 355247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00016 3 248 Receptor kinase-like Gene Family AT1G51860 43.279 4.00e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi470g00016 PK_Tyr_Ser-Thr 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00016 - - aprc:113851009 331.643