Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi470g00007 ATGTGGCAGAGAAGCCACGAGTCTTCTGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAGACATGAAAAACGTCAAGAGAGAAAGAGATGAATCACCACTCACTCTTGGTTGCCTTTCAAGCACCTCCACATGCTATCACCAGCATAATCCTCAGCAGGCTAAAGCTAAAGTTTCATCCTTTCTTCAGCTTCAATCAAGCCCACAAAACATGCCAAGGATGGGAGAGAAGAATGCATTCTTATCCTCTTCTGCAAATTCAGATGTGCCTAAAAAGTCTCAAAAAAGAACTGCTGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATCCAGGAAGAATCTTGCAAGTGGAAGCTCTTCTAAGTCACCTTCTGGGTCCCAGCAACATCAACATGTGGTTCCAGACAAGGTTGCTAGCAGCAACAAACCTATTGGGAACTCTGGTGGTAAAGGGTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGTAGAAAAGTGGACATCAATGCTTACAACAGTTATGAAAAACTTTCATCTGCTGTTGATGAGCTCTTTAGAGGCCTCCTTTCAGAAATAAATTTATCTCATGTTGTGTTTTCCCACTGCTGTTCTGCTGAAAGAGATTCCTCTGCTGGTGGAATTCACAACAAGGAAGAGGAAGAGAAAACCATCACGGGTTTATTGATTGGAAGCGGGGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTTGGAGATGTGCCGTGGCACATATTTGTATCAACAGTGAAGAGGCTGCGGCTGTTGAAGAGTTGTGATCTTCGTGGTTATACCTTAGGAAGTAAGAAAGACTAA 876 0.4338 MWQRSHESSEERKLELRLGPPGEESLNEDMKNVKRERDESPLTLGCLSSTSTCYHQHNPQQAKAKVSSFLQLQSSPQNMPRMGEKNAFLSSSANSDVPKKSQKRTAAGPVVGWPPIRSSRKNLASGSSSKSPSGSQQHQHVVPDKVASSNKPIGNSGGKGLFVKINMDGVPIGRKVDINAYNSYEKLSSAVDELFRGLLSEINLSHVVFSHCCSAERDSSAGGIHNKEEEEKTITGLLIGSGEYTLVYEDNEGDKMLVGDVPWHIFVSTVKRLRLLKSCDLRGYTLGSKKD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi470g00007 291 FunFam Auxin-responsive protein 155 289 - -
Sebi470g00007 291 Gene3D - 155 289 - -
Sebi470g00007 291 MobiDBLite consensus disorder prediction 55 101 - -
Sebi470g00007 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 280 IPR003311 GO:0005634|GO:0006355
Sebi470g00007 291 MobiDBLite consensus disorder prediction 55 153 - -
Sebi470g00007 291 SUPERFAMILY CAD & PB1 domains 152 275 - -
Sebi470g00007 291 ProSiteProfiles PB1 domain profile. 160 278 IPR000270 GO:0005515
Sebi470g00007 291 MobiDBLite consensus disorder prediction 120 153 - -
Sebi470g00007 291 MobiDBLite consensus disorder prediction 1 40 - -
Sebi470g00007 291 Pfam AUX/IAA family 14 283 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi470g00007 Sebi-Chr470 170671 172967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi470g00007 164 289 B3 DNA Binding Superfamily AT4G23980 28.571 1.27e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sebi470g00007 AUX_IAA 1.3e-64 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi470g00007 K14484 - gmx:100793822 368.237