Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi46g00003 ATGTGGGGACATGGATCACAGTATCGTAGAGGACCAGACTCACTGAAACGAACTCATCCACGGCCCTTATTAGACATTCCATGCTATTGTTGTTCAAAGGGATGCAAGAACAACATTGAACACCCAAGAGCTAAGCCTCTGAAGGATTTTCGAACTTTGCAGACACATTACAAGAGAAAGCACGGGGCAAAGCCCTTTACATGTCGCAAGTGTGGGAAGTCCTTGGCAGTGAAGGGTGATTGGAGAACCCATGAGAAAAACTGTGGCAAACGCTGGCTTTGTATTTGTGGTTCGGACTTCAAACATAAGAGGTCGCTTAAAGACCATATCAAAGCATTTGGCTTTGGACATAGCCCTTTTTCTTCTTCAGCTGAGGGCATGTAA 384 0.4531 MWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGAKPFTCRKCGKSLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSAEGM 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi46g00003 127 PANTHER ZINC FINGER PROTEIN WIP2 1 121 IPR043584 GO:0003700|GO:0010468
Sebi46g00003 127 Gene3D Classic Zinc Finger 44 123 - -
Sebi46g00003 127 SUPERFAMILY beta-beta-alpha zinc fingers 51 86 IPR036236 -
Sebi46g00003 127 FunFam Zinc finger protein WIP2 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi46g00003 Sebi-Chr46 72107 72490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi46g00003 1 122 C2H2 Transcription Factor Family AT1G34790 79.508 1.45e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi46g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi46g00003 - - ccaj:109809318 278.1